duplicated completeIn Cabernet Sauvignon, the Two locally phased pseudohaplotypes were generated by Supernova 2.0. The average distance of the adjacent SNPs between two haploblocks ranges from 371 to 406 bp. Since the sequence similarity between these two haploblocks is high, only the pseudohap1 assembly was used to represent the genome in the downstream analysis. The molecular length, effective depth, and assembly statistics for each genome are illustrated in Supplementary Table 1.