Table 1: Sequencing and Accessions: ID, Assembly Acc, Run Size
De novo assembly of the genomes was performed using SPAdes, using riboSeed to help resolve rDNA repeats. Assemblies were annotated using Prokka; genes were called with Prodigal, tRNA's were predicted with ARAGORN, rRNAs were predicted with Barrnap, and MINCED was used to predict CRISPRs (Table 2).
Table 2: Assembly Characteristics: ID, Assembled Length, # contigs, genes, tRNAs, rRNAs, CRISPRs
These strains are described further in the following work [[ reference to the actual article? waiting to hear back from the editor]]/
ACKNOWLEDGEMENTS