Let's get some clarity around the process. I want to work offline and online. I can use a web browser to write my text when I am online, but I use a plain text editor and nothing else when I am offline and working from my simple computer or a tablet device where I can store some of the files or access files from the web and nothing more. Here are the rules:
- Write in markdown your main text
- Use a jupyter notebook to conduct data analysis ideally using python but optionally using R
- Save the tables as csv files then do the following (see below)
- Save the figures as jpg and do the following (see below)
- Save the citations in bibliography/biblio.bib file as bibtex citations
- When you want to cite them, use \cite{citation_id}
- Finally edit the layout file
- Before you do all these, make sure you create a git link to interact with the files
What shall we do with the figures that we have created as part of ipynb?
Create the tables & figures as csv & jpg; both python and R will allow you to export files as CSV
Create a subfolder in the figures folder with the filename
push the csv file in that subfolder
copy the files caption.html and config.yml from the existing figures folder to the current folder and change the parameters
push the ipynb file to the figures/<newfigure> folder
After everything is done, edit the layout.md file to select the order and content of the files.
Everything in the file is placeholder. Feel free to change things as you think fit.