Captions

Figure 1. Hi-C and synteny plot comparing H. glycines TN10 genome and X12 genome. A. Hi-C plot of the nine pseudomolecules in the TN10 genome. B. Gene-based synteny between TN10 and X12 H. glycinesgenomes.
Table 1. Relevant genome stats of related nematode genome assemblies.
Table 2. Gene, transcript, and exon stats for the TN10 pseudomolecule assembly and related species statistics
Table 3. Differentially expressed transcripts and genes with consecutive filtration by significant differential expression, greater than one log2fold change, signal peptide presence, and the lack of transmembrane domain. These filtered genes are further defined by the presence of a nuclear localization signal and if a gene was associated with a previously identified effector.
Supplemental Table 1. Genomic repeat content comparisons between the current assembly, the TN10 draft, and the X12 genome.
Supplementary Table 2. Chromosome size differences between the TN10 and X12 pseudomolecule assemblies.
Supplemental Table 3. Gene, transcript, and exon statistics for the final consensus gene annotation, and the input assemblies.
Supplemental Table 4. Genes and mRNAs in the TN10 genome that were annotated by a database.
Supplemental Table 5. Comparison of TN10 and X12 genome prediction through the annotation of various databases.