References

Kinmonth-Schultz, Hannah A., Greg S. Golembeski, and Takato Imaizumi. 2013. “Circadian Clock-Regulated Physiological Outputs: Dynamic Responses in Nature”. Seminars in Cell & Developmental Biology24 (5): 407–13. https://doi.org/10.1016/j.semcdb.2013.02.006.
Covington, Michael F., Satchidananda Panda, Xing Liang Liu, Carl A. Strayer, D. Ry Wagner, and Steve A. Kay. 2001. “ELF3 Modulates Resetting of the Circadian Clock in Arabidopsis”. The Plant Cell13 (6): 1305. https://doi.org/10.2307/3871297.
Edwards, Kieron D, Ozgur E Akman, Kirsten Knox, Peter J Lumsden, Adrian W Thomson, Paul E Brown, Alexandra Pokhilko, et al. 2010. “Quantitative Analysis of Regulatory Flexibility under Changing Environmental Conditions”. Molecular Systems Biology 6 (November). https://doi.org/10.1038/msb.2010.81.
Seo, P. J., and P. Mas. 2014. “Multiple Layers of Posttranslational Regulation Refine Circadian Clock Activity in Arabidopsis”. The Plant Cell 26 (1): 79–87. https://doi.org/10.1105/tpc.113.119842.
Michael, T. P., P. A. Salome, and C. R. McClung. 2003. “Two Arabidopsis Circadian Oscillators Can Be Distinguished by Differential Temperature Sensitivity”. Proceedings of the National Academy of Sciences100 (11): 6878–83. https://doi.org/10.1073/pnas.1131995100.
Gould, P. D. 2006. “The Molecular Basis of Temperature Compensation in the Arabidopsis Circadian Clock”. THE PLANT CELL ONLINE 18 (5): 1177–87. https://doi.org/10.1105/tpc.105.039990.
McClung, C. Robertson, and Seth J. Davis. 2010. “Ambient Thermometers in Plants: From Physiological Outputs towards Mechanisms of Thermal Sensing”. Current Biology 20 (24): R1086–R1092. https://doi.org/10.1016/j.cub.2010.10.035.
Salome, P. A., D. Weigel, and C. R. McClung. 2010. “The Role of the Arabidopsis Morning Loop Components CCA1 LHY PRR7, and PRR9 in Temperature Compensation”. THE PLANT CELL ONLINE 22 (11): 3650–61. https://doi.org/10.1105/tpc.110.079087.
Mizuno, Takeshi, Yuji Nomoto, Haruka Oka, Miki Kitayama, Aya Takeuchi, Mayuka Tsubouchi, and Takafumi Yamashino. 2014. “Ambient Temperature Signal Feeds into the Circadian Clock Transcriptional Circuitry Through the EC Night-Time Repressor in Arabidopsis Thaliana”. Plant and Cell Physiology 55 (5): 958–76. https://doi.org/10.1093/pcp/pcu030.
Mwimba, Musoki, Sargis Karapetyan, Lijing Liu, Jorge Marqués, Erin M. McGinnis, Nicolas E. Buchler, and Xinnian Dong. 2018. “Daily Humidity Oscillation Regulates the Circadian Clock to Influence Plant Physiology”. Nature Communications 9 (1). https://doi.org/10.1038/s41467-018-06692-2.
Haydon, Michael J., Timothy J. Hearn, Laura J. Bell, Matthew A. Hannah, and Alex A.R. Webb. 2013. “Metabolic Regulation of Circadian Clocks”.Seminars in Cell & Developmental Biology 24 (5): 414–21. https://doi.org/10.1016/j.semcdb.2013.03.007.
Hall, Anthony, László Kozma-Bognár, Ruth M. Bastow, Ferenc Nagy, and Andrew J. Millar. 2002. “Distinct Regulation OfCABandPHYBgene Expression by Similar Circadian Clocks”. The Plant Journal 32 (4): 529–37. https://doi.org/10.1046/j.1365-313x.2002.01441.x.
Salomé, PA, TP Michael, EV Kearns, AG Fett-Neto, RA Sharrock, and CR McClung. 2002. “The out of Phase 1 Mutant Defines a Role for PHYB in Circadian Phase Control in Arabidopsis.”. Plant Physiol 129: 1674–85.
Devlin, PF, and SA Kay. 2000. “Cryptochromes Are Required for Phytochrome Signaling to the Circadian Clock but Not for Rhythmicity.”.Plant Cell 12: 2499–2510.
Zoltowski, BD, and T Imaizumi. 2014. “Structure and Function of the ZTL/FKF1/LKP2 Group Proteins in Arabidopsis.”. Enzymes 35: 213–39.
Somers, DE, WY Kim, and R Geng. 2004. “The F-Box Protein ZEITLUPE Confers Dosage-Dependent Control on the Circadian Clock, Photomorphogenesis, and Flowering Time.”. Plant Cell 16: 769–82.
Kim, W.-Y. 2005. “Independent Roles for EARLY FLOWERING 3 and ZEITLUPE in the Control of Circadian Timing Hypocotyl Length, and Flowering Time”. PLANT PHYSIOLOGY 139 (3): 1557–69. https://doi.org/10.1104/pp.105.067173.
Legris, Martina, Cornelia Klose, E. Sethe Burgie, Cecilia Costigliolo Rojas Rojas, Maximiliano Neme, Andreas Hiltbrunner, Philip A. Wigge, Eberhard Schäfer, Richard D. Vierstra, and Jorge J. Casal. 2016. “Phytochrome B Integrates Light and Temperature Signals in Arabidopsis”. Science 354 (6314): 897–900. https://doi.org/10.1126/science.aaf5656.
Jung, JH, M Domijan, C Klose, S Biswas, D Ezer, M Gao, AK Khattak, et al. 2016. “Phytochromes Function as Thermosensors in Arabidopsis.”.Science 354: 886–89.
Ezer, D, JH Jung, H Lan, S Biswas, L Gregoire, MS Box, V Charoensawan, et al. 2017. “The Evening Complex Coordinates Environmental and Endogenous Signals in Arabidopsis.”. Nat Plants 3: 17087.
Huang, H, S Alvarez, R Bindbeutel, Z Shen, MJ Naldrett, BS Evans, SP Briggs, LM Hicks, SA Kay, and DA Nusinow. 2016. “Identification of Evening Complex Associated Proteins in Arabidopsis by Affinity Purification and Mass Spectrometry.”. Mol Cell Proteomics 15: 201–17.
Davis, AM, J Ronald, Z Ma, AJ Wilkinson, K Philippou, T Shindo, C Queitsch, and SJ Davis. 2018. “HSP90 Contributes to Entrainment of the <i>Arabidopsis</i> Circadian Clock via the Morning Loop.”. Genetics 210: 1383–90.
Grundy, Jack, Claire Stoker, and Isabelle A. Carré. 2015. “Circadian Regulation of Abiotic Stress Tolerance in Plants”. Frontiers in Plant Science 6 (August). https://doi.org/10.3389/fpls.2015.00648.
Cortijo, Sandra, Zeynep Aydin, Sebastian Ahnert, and James Locke. 2018. “Widespread Inter-Individual Gene Expression Variability in Arabidopsis Thaliana”, May. https://doi.org/10.1101/335380.
Rugnone, M. L., A. Faigon Soverna, S. E. Sanchez, R. G. Schlaen, C. E. Hernando, D. K. Seymour, E. Mancini, et al. 2013. “LNK Genes Integrate Light and Clock Signaling Networks at the Core of the Arabidopsis Oscillator”. Proceedings of the National Academy of Sciences 110 (29): 12120–25. https://doi.org/10.1073/pnas.1302170110.
Dickinson, PJ, M Kumar, C Martinho, SJ Yoo, H Lan, G Artavanis, V Charoensawan, et al. 2018. “Chloroplast Signaling Gates Thermotolerance in Arabidopsis.”. Cell Rep 22: 1657–65.
Michael, TP, G Breton, SP Hazen, H Priest, TC Mockler, SA Kay, and J Chory. 2008. “A Morning-Specific Phytohormone Gene Expression Program Underlying Rhythmic Plant Growth.”. PLoS Biol 6: e225.
Ezer, D, SJK Shepherd, A Brestovitsky, P Dickinson, S Cortijo, V Charoensawan, MS Box, S Biswas, KE Jaeger, and PA Wigge. 2017. “The G-Box Transcriptional Regulatory Code in Arabidopsis.”. Plant Physiol 175: 628–40.
Ingle, RA, C Stoker, W Stone, N Adams, R Smith, M Grant, I Carré, LC Roden, and KJ Denby. 2015. “Jasmonate Signalling Drives Time-of-Day Differences in Susceptibility of Arabidopsis to the Fungal Pathogen Botrytis Cinerea.”. Plant J 84: 937–48.
Annunziata, MG, F Apelt, P Carillo, U Krause, R Feil, K Koehl, JE Lunn, and M Stitt. 2018. “Response of Arabidopsis Primary Metabolism and Circadian Clock to Low Night Temperature in a Natural Light Environment.”. J Exp Bot 69: 4881–95.
Ibaraki, Yasuomi. 2016. “Lighting Efficiency in Plant Production Under Artificial Lighting and Plant Growth Modeling for Evaluating the Lighting Efficiency”. In LED Lighting for Urban Agriculture , 151–61. Springer Singapore. https://doi.org/10.1007/978-981-10-1848-0_11.
Gupta, S. Dutta, and A. Agarwal. 2017. “Artificial Lighting System for Plant Growth and Development: Chronological Advancement Working Principles, and Comparative Assessment”. In Light Emitting Diodes for Agriculture , 1–25. Springer Singapore. https://doi.org/10.1007/978-981-10-5807-3_1.
Olvera-Gonzalez, Ernesto, Daniel Alaniz-Lumbreras, Rumen Ivanov-Tsonchev, Jesus Villa-Hernández, Carlos Olvera-Olvera, Efrén González-Ramírez, Ma Araiza-Esquivel, Vianey Torres-Argüelles, and Víctor Castaño. 2013. “Intelligent Lighting System for Plant Growth and Development”. Computers and Electronics in Agriculture 92 (March): 48–53. https://doi.org/10.1016/j.compag.2012.11.012.
Ikeda, M., N. Mitsuda, and M. Ohme-Takagi. 2011. “Arabidopsis HsfB1 and HsfB2b Act as Repressors of the Expression of Heat-Inducible Hsfs But Positively Regulate the Acquired Thermotolerance”. PLANT PHYSIOLOGY 157 (3): 1243–54. https://doi.org/10.1104/pp.111.179036.
Son, Ora, Yoon-Sun Hur, Yun-Kyung Kim, Hyun-Jung Lee, Sunghan Kim, Mi-Ran Kim, Kyoung Hee Nam, et al. 2010. “ATHB12 an ABA-Inducible Homeodomain-Leucine Zipper (HD-Zip) Protein of Arabidopsis, Negatively Regulates the Growth of the Inflorescence Stem by Decreasing the Expression of a Gibberellin 20-Oxidase Gene”. Plant and Cell Physiology 51 (9): 1537–47. https://doi.org/10.1093/pcp/pcq108.
Song, L., S.-s. C. Huang, A. Wise, R. Castanon, J. R. Nery, H. Chen, M. Watanabe, J. Thomas, Z. Bar-Joseph, and J. R. Ecker. 2016. “A Transcription Factor Hierarchy Defines an Environmental Stress Response Network”. Science 354 (6312): aag1550–aag1550. https://doi.org/10.1126/science.aag1550.
Yanovsky, Marcelo J, M.Agustina Mazzella, and Jorge J Casal. 2000. “A Quadruple Photoreceptor Mutant Still Keeps Track of Time”.Current Biology 10 (16): 1013–15. https://doi.org/10.1016/s0960-9822(00)00651-5.
Liu, Tiffany, Jenny Carlsson, Tomomi Takeuchi, Linsey Newton, and Eva M. Farré. 2013. “Direct Regulation of Abiotic Responses by the Arabidopsis Circadian Clock Component PRR7”. The Plant Journal , August, n/a–n/a. https://doi.org/10.1111/tpj.12276.
Yoshida, Takumi, Naohiko Ohama, Jun Nakajima, Satoshi Kidokoro, Junya Mizoi, Kazuo Nakashima, Kyonoshin Maruyama, et al. 2011. “Arabidopsis HsfA1 Transcription Factors Function as the Main Positive Regulators in Heat Shock-Responsive Gene Expression”. Molecular Genetics and Genomics 286 (5-6): 321–32. https://doi.org/10.1007/s00438-011-0647-7.
Daszkowska-Golec, Agata. 2016. “The Role of Abscisic Acid in Drought Stress: How ABA Helps Plants to Cope with Drought Stress”. InDrought Stress Tolerance in Plants Vol 2 , 123–51. Springer International Publishing. https://doi.org/10.1007/978-3-319-32423-4_5.
O’Malley, Ronan C., Shao-shan Carol Huang, Liang Song, Mathew G. Lewsey, Anna Bartlett, Joseph R. Nery, Mary Galli, Andrea Gallavotti, and Joseph R. Ecker. 2016. “Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape”. Cell 165 (5): 1280–92. https://doi.org/10.1016/j.cell.2016.04.038.
Chen, Yi-Shih, Yi-Chi Chao, Tzu-Wei Tseng, Chun-Kai Huang, Pei-Ching Lo, and Chung-An Lu. 2016. “Two MYB-Related Transcription Factors Play Opposite Roles in Sugar Signaling in Arabidopsis”. Plant Molecular Biology 93 (3): 299–311. https://doi.org/10.1007/s11103-016-0562-8.
Nicholson, Joshua M, Joana C Macedo, Aaron J Mattingly, Darawalee Wangsa, Jordi Camps, Vera Lima, Ana M Gomes, et al. 2015. “Chromosome Mis-Segregation and Cytokinesis Failure in Trisomic Human Cells”.ELife 4 (May). https://doi.org/10.7554/elife.05068.