References
APHA. 1998. Standard Methods for the Examination of Water and Wastewater
20th ed. Washington D.C.: American Public Health Association.
Axelsson L, Ahrné S. 2000. Lactic acid bacteria. In: . Appl.
Microb. Syst. Springer, pp. 367–388.
Bachmann H, Molenaar D, Branco dos Santos F, Teusink B. 2017.
Experimental evolution and the adjustment of metabolic strategies in
lactic acid bacteria. FEMS Microbiol. Rev.41 :S201–S219.
Bosdriesz E, Molenaar D, Teusink B, Bruggeman FJ. 2015. How fast-growing
bacteria robustly tune their ribosome concentration to approximate
growth-rate maximization. FEBS J. 282 :2029–2044.
Buckel W, Thauer RK. 2013. Energy conservation via electron bifurcating
ferredoxin reduction and proton/Na+ translocating ferredoxin oxidation.Biochim. Biophys. Acta - Bioenerg. 1827 :94–113.
Bunce JT, Ndam E, Ofiteru ID, Moore A, Graham DW. 2018. A review of
phosphorus removal technologies and their applicability to small-scale
domestic wastewater treatment systems. Front. Environ. Sci.6 :1–15.
Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello
EK, Fierer N, Peña AG, Goodrich JK, Gordon JI, Huttley GA, Kelley ST,
Knights D, Koenig JE, Ley RE, Lozupone CA, McDonald D, Muegge BD,
Pirrung M, Reeder J, Sevinsky JR, Turnbaugh PJ, Walters WA, Widmann J,
Yatsunenko T, Zaneveld J, Knight R. 2010. QIIME allows analysis of
high-throughput community sequencing data. Nat. Methods7 :335.
Caporaso JG, Lauber CL, Walters WA, Berg-Lyons D, Lozupone CA, Turnbaugh
PJ, Fierer N, Knight R. 2011. Global patterns of 16S rRNA diversity at a
depth of millions of sequences per sample. Proc. Natl. Acad. Sci.
U. S. A. 108 Suppl :4516–22.
Cocaign-Bousquet M, Garrigues C, Novak L, Lindley ND, Loublere P. 1995.
Rational development of a simple synthetic medium for the sustained
growth of Lactococcus lactis. J. Appl. Microbiol.79 :108–116.
Dabrock B, Bahl H, Gottschalk G. 1992. Parameters Affecting Solvent
Production by Clostridium pasteurianum. Appl. Environ. Microbiol.58 :1233–1239.
Duncan SH, Louis P, Flint HJ. 2004. Lactate-utilizing bacteria, isolated
from human feces, that produce butyrate as a major fermentation product.Appl. Environ. Microbiol. 70 :5810–5817.
Frutiger J, Marcarie C, Abildskov J, Sin G. 2016. A Comprehensive
Methodology for Development, Parameter Estimation, and Uncertainty
Analysis of Group Contribution Based Property Models-An Application to
the Heat of Combustion. J. Chem. Eng. Data 61 :602–613.
Gonzalez-Garcia R, McCubbin T, Navone L, Stowers C, Nielsen L, Marcellin
E. 2017. Microbial Propionic Acid Production. Fermentation3 :21.
Gonzalez-Gil L, Mauricio-iglesias M, Carballa M, Lema JM. 2018. Why are
organic micropollutants not fully biotransformed? A mechanistic
modelling approach to anaerobic systems. Water Res.142 :115–128.
de Groot DH, van Boxtel C, Planqué R, Bruggeman FJ, Teusink B. 2018. The
number of active metabolic pathways is bounded by the number of cellular
constraints at maximal metabolic rates. bioRxiv :167171.
Hasona A, Kim Y, Healy FG, Ingram LO, Shanmugam KT. 2004. Pyruvate
Formate Lyase and Acetate Kinase Are Essential for Anaerobic Growth of
Escherichia coli on Xylose. J. Bacteriol.186 :7593–7600.
Helton JC, Davis FJ. 2003. Latin hypercube sampling and the propagation
of uncertainty in analyses of complex systems. Reliab. Eng. Syst.
Saf. 81 :23–69.
Jia H-R, Geng L-L, Li Y-H, Wang Q, Diao Q-Y, Zhou T, Dai P-L. 2016. The
effects of Bt Cry1Ie toxin on bacterial diversity in the midgut of Apis
mellifera ligustica (Hymenoptera: Apidae). Sci. Rep.6 :24664.
Johnson K, Jiang Y, Kleerebezem R, Muyzer G, Loosdrecht MCM Van. 2009.
Enrichment of a Mixed Bacterial Culture with a High Polyhydroxyalkanoate
Storage Capacity. Biomacromolecules 10 :670–676.
Kaparaju P, Serrano M, Thomsen AB, Kongjan P, Angelidaki I. 2009.
Bioethanol, biohydrogen and biogas production from wheat straw in a
biorefinery concept. Bioresour. Technol. 100 :2562–2568.
Kim D-H, Lee M-K, Hwang Y, Im W-T, Yun Y-M, Park C, Kim M-S. 2016.
Microbial granulation for lactic acid production. Biotechnol.
Bioeng. 113 :101–11.
Kim Y, Ingram LO, Shanmugam KT. 2007. Construction of an Escherichia
coli K-12 mutant for homoethanologenic fermentation of glucose or xylose
without foreign genes. Appl. Environ. Microbiol.73 :1766–1771.
Kitay E, Snell EE. 1950. Some additional nutritional requirements of
certain lactic acid bacteria. J. Bacteriol. 60 :49.
Kleerebezem R, van Loosdrecht MC. 2007. Mixed culture biotechnology for
bioenergy production. Curr. Opin. Biotechnol.18 :207–212.
Lawford HG, Rousseau JD. 1995. Comparative Energetics of Glucose and
Xylose Metabolism in Ethanologenic Recombinant Escherichia coil B.Appl. Biochem. Biotechnol. 51 :179–195.
LeBlanc JG, Laiño JE, del Valle MJ, Vannini V, van Sinderen D, Taranto
MP, de Valdez GF, de Giori GS, Sesma F. 2011. B-Group vitamin production
by lactic acid bacteria – current knowledge and potential applications.J. Appl. Microbiol. 111 :1297–1309.
Leroy F, De Vuyst L. 2004. Lactic acid bacteria as functional starter
cultures for the food fermentation industry. Trends Food Sci.
Technol. 15 :67–78.
Li Z, Nimtz M, Rinas U. 2014. The metabolic potential of Escherichia
coli BL21 in defined and rich medium. Microb. Cell Fact.13 :45.
Lin C, Chang C, Hung C. 2008. Fermentative hydrogen production from
starch using natural mixed cultures. Int. J. Hydrogen Energy33 :2445–2453.
Louis P, Flint HJ. 2009. Diversity, metabolism and microbial ecology of
butyrate-producing bacteria from the human large intestine. FEMS
Microbiol. Lett. 294 :1–8.
Madigan MT, Martinko JM. 2006. Brock Biology Of Microorganisms 11th
edition. Pearson Prentice Hall 992 p.
Magnúsdóttir S, Ravcheev D, de Crécy-Lagard V, Thiele I. 2015.
Systematic genome assessment of B-vitamin biosynthesis suggests
co-operation among gut microbes. Front. Genet.
Marounek M, Fliegrova K, Bartos S. 1989. Metabolism and some
characteristics of ruminal strains of Megasphaera elsdenii. Appl.
Environ. Microbiol. 55 :1570–1573.
Molenaar D, van Berlo R, de Ridder D, Teusink B. 2009. Shifts in growth
strategies reflect tradeoffs in cellular economics. Mol. Syst.
Biol. 5 .
Moscoviz R, Trably E, Bernet N, Carrère H. 2018. The environmental
biorefinery: State-of-the-art on the production of hydrogen and
value-added biomolecules in mixed-culture fermentation. Green
Chem. 20 :3159–3179.
Muyzer G, de Waal EC, Uitterlinden AG. 1993. Profiling of complex
microbial populations by denaturing gradient gel electrophoresis
analysis of polymerase chain reaction-amplified genes coding for 16S
rRNA. Appl. Environ. Microbiol. 59 :695–700.
Novak L, Cocaign-Bousquet M, Lindley ND, Loubiere P. 1997. Metabolism
and energetics of Lactococcus lactis during growth in complex or
synthetic media. Appl. Environ. Microbiol.63 :2665–2670.
Olmos-Dichara A, Ampe F, Uribelarrea J-L, Pareilleux A, Goma G. 1997.
Growth and lactic acid production by Lactobacillus casei ssp. rhamnosus
in batch and membrane bioreactor: influence of yeast extract and
Tryptone enrichment. Biotechnol. Lett. 19 :709–714.
Paritosh K, Kushwaha SK, Yadav M, Pareek N, Chawade A, Vivekanand V.
2017. Food Waste to Energy: An Overview of Sustainable Approaches for
Food Waste Management and Nutrient Recycling. Biomed Res. Int.2017 :2370927.
Pirt SJ. 1965. The maintenance energy of bacteria in growing cultures.Proc. R. Soc. London. Ser. B. Biol. Sci. 163 :224 LP –
231.
Piveteau P. 1999. Metabolism of lactate and sugars by dairy
propionibacteria: A review. Lait 79 :23–41.
Plengvidhya V, Breidt Jr F, Lu Z, Fleming HP. 2007. DNA fingerprinting
of lactic acid bacteria in sauerkraut fermentations. Appl.
Environ. Microbiol. 73 :7697–7702.
Prabhu R, Altman E, Eiteman MA. 2012. Lactate and acrylate metabolism by
Megasphaera elsdenii under batch and steady-state conditions.Appl. Environ. Microbiol. 78 :8564–8570.
Roger P, Delettre J, Bouix M, Béal C. 2011. Characterization of
Streptococcus salivarius growth and maintenance in artificial saliva.J. Appl. Microbiol. 111 :631–641.
Rombouts JL, Mos G, Weissbrodt DG, Kleerebezem R, van Loosdrecht MCM.
2019. Diversity and metabolism of xylose and glucose fermenting
microbial communities in sequencing batch or continuous culturing.FEMS Microbiol. Ecol. 95 .
Schleifer KH, Amann RI, Ludwig W. 1995. Phylogenetic identification and
in situ detection of individual microbial cells without cultivation .
Phylogenetic Identification and In Situ Detection of Individual
Microbial Cells without Cultivation 59 :143–169.
Seeliger S, Janssen PH, Schink B. 2002. Energetics and kinetics of
lactate fermentation to acetate and propionate via methylmalonyl-CoA or
acrylyl-CoA. FEMS Microbiol. Lett. 211 :65–70.
Solís G, de los Reyes-Gavilan CG, Fernández N, Margolles A, Gueimonde M.
2010. Establishment and development of lactic acid bacteria and
bifidobacteria microbiota in breast-milk and the infant gut.Anaerobe 16 :307–310.
Spirito CM, Richter H, Stams AJ, Angenent LT. 2014. Chain elongation in
anaerobic reactor microbiomes to recover resources from waste.Curr. Opin. Biotechnol. 27 :115–122.
Stouthamer a H. 1973. A theoretical study on the amount of ATP required
for synthesis of microbial cell material. Antonie Van Leeuwenhoek39 :545–565.
Straathof AJJ. 2014. Transformation of Biomass into Commodity Chemicals
Using Enzymes or Cells. Chem. Rev. 114 :1871–1908.
Tamis J, Joosse BM, Loosdrecht MCM va., Kleerebezem R. 2015. High-rate
volatile fatty acid (VFA) production by a granular sludge process at low
pH. Biotechnol. Bioeng. 112 :2248–2255.
Tang J, Yuan Y, Guo WQ, Ren NQ. 2012. Inhibitory effects of acetate and
ethanol on biohydrogen production of Ethanoligenens harbinese B49.Int. J. Hydrogen Energy 37 :741–747.
Temudo M. 2008. Directing Product Formation by Mixed Culture
Fermentation.
Temudo MF, Kleerebezem R, van Loosdrecht M. 2007. Influence of the pH on
(open) mixed culture fermentation of glucose: a chemostat study.Biotechnol. Bioeng. 98 :69–79.
Teusink B, Bachmann H, Molenaar D. 2011. Systems biology of lactic acid
bacteria: a critical review. Microb. Cell Fact. 10 :S11.
Tholozan J, Membr J, Kubaczka M. 1996. Effects of culture conditions on
Pectinatus frisingensis metabolism: a physiological and statistical
approach. J. Appl. Bacteriol. 80 :418–424.
Thomas TD, Ellwood DC, Longyear VMC. 1979. Change from homo- to
heterolactic fermentation by Streptococcus lactis resulting from glucose
limitation in anaerobic chemostat cultures. J. Bacteriol.138 :109–117.
De Vries W, Kapteijn WMC, Van Der Beek EG, Stouthamer AH. 1970. Molar
Growth Yields and Fermentation Balances of Lactobacillus casei L3 in
Batch Cultures and in Continuous Cultures. Microbiology63 :333–345.
Waller JR, Lichstein HC. 1965. Biotin transport and accumulation by
cells of Lactobacillus plantarum. II. Kinetics of the system. J.
Bacteriol. 90 :853–856.
Wang Q, Garrity GM, Tiedje JM, Cole JR. 2007. Naive Bayesian classifier
for rapid assignment of rRNA sequences into the new bacterial taxonomy.Appl. Environ. Microbiol. 73 :5261–7.
Xing D, Ren N, Li Q, Lin M, Wang A, Zhao L. 2006. Ethanoligenens
harbinense gen. nov., sp. nov., isolated from molasses wastewater.Int. J. Syst. Evol. Microbiol. 56 :755–760.