Figure 3 Alignment of Larix classified reads from hybridization capture dataset against the Larix chloroplast reference genome. The coverage per position is depicted in grey. For the 294 sites variable between the L. gmelinii and L. sibirica chloroplast genomes, colour indicates how many reads correspond to the variation found in each of the two species or if a read contained a variation found in neither of the two species (“other”). Key for the coloured arrows annotating the functional groups. IR: inverted repeat, ORF: open reading frame of unknown function, rRNA: ribosomal RNA, tRNA: transfer RNA.