Table 4. A comparison between DADA2 and MAUI-seq for a subset of the Field-Samples-2 data summarised in Table 3: the rpoB sequences from samples amplified by Phusion (proofreading) polymerase. Red cells refer to rejected sequences. Green cells refer to sequences, which are accepted by MAUI-seq, while DADA2 rejects them as potential chimeras. Yellow cells refer to sequences filtered out due to low UMI count by MAUI-seq. Table 4. A comparison between DADA2 and MAUI-seq for a subset of the Field-Samples-2 data summarised in Table 3: the rpoB sequences from samples amplified by Phusion (proofreading) polymerase. Red cells refer to rejected sequences. Green cells refer to sequences, which are accepted by MAUI-seq, while DADA2 rejects them as potential chimeras. Yellow cells refer to sequences filtered out due to low UMI count by MAUI-seq. Table 4. A comparison between DADA2 and MAUI-seq for a subset of the Field-Samples-2 data summarised in Table 3: the rpoB sequences from samples amplified by Phusion (proofreading) polymerase. Red cells refer to rejected sequences. Green cells refer to sequences, which are accepted by MAUI-seq, while DADA2 rejects them as potential chimeras. Yellow cells refer to sequences filtered out due to low UMI count by MAUI-seq. Table 4. A comparison between DADA2 and MAUI-seq for a subset of the Field-Samples-2 data summarised in Table 3: the rpoB sequences from samples amplified by Phusion (proofreading) polymerase. Red cells refer to rejected sequences. Green cells refer to sequences, which are accepted by MAUI-seq, while DADA2 rejects them as potential chimeras. Yellow cells refer to sequences filtered out due to low UMI count by MAUI-seq. Table 4. A comparison between DADA2 and MAUI-seq for a subset of the Field-Samples-2 data summarised in Table 3: the rpoB sequences from samples amplified by Phusion (proofreading) polymerase. Red cells refer to rejected sequences. Green cells refer to sequences, which are accepted by MAUI-seq, while DADA2 rejects them as potential chimeras. Yellow cells refer to sequences filtered out due to low UMI count by MAUI-seq. Table 4. A comparison between DADA2 and MAUI-seq for a subset of the Field-Samples-2 data summarised in Table 3: the rpoB sequences from samples amplified by Phusion (proofreading) polymerase. Red cells refer to rejected sequences. Green cells refer to sequences, which are accepted by MAUI-seq, while DADA2 rejects them as potential chimeras. Yellow cells refer to sequences filtered out due to low UMI count by MAUI-seq. Table 4. A comparison between DADA2 and MAUI-seq for a subset of the Field-Samples-2 data summarised in Table 3: the rpoB sequences from samples amplified by Phusion (proofreading) polymerase. Red cells refer to rejected sequences. Green cells refer to sequences, which are accepted by MAUI-seq, while DADA2 rejects them as potential chimeras. Yellow cells refer to sequences filtered out due to low UMI count by MAUI-seq. Table 4. A comparison between DADA2 and MAUI-seq for a subset of the Field-Samples-2 data summarised in Table 3: the rpoB sequences from samples amplified by Phusion (proofreading) polymerase. Red cells refer to rejected sequences. Green cells refer to sequences, which are accepted by MAUI-seq, while DADA2 rejects them as potential chimeras. Yellow cells refer to sequences filtered out due to low UMI count by MAUI-seq. Table 4. A comparison between DADA2 and MAUI-seq for a subset of the Field-Samples-2 data summarised in Table 3: the rpoB sequences from samples amplified by Phusion (proofreading) polymerase. Red cells refer to rejected sequences. Green cells refer to sequences, which are accepted by MAUI-seq, while DADA2 rejects them as potential chimeras. Yellow cells refer to sequences filtered out due to low UMI count by MAUI-seq.
Raw reads Raw reads MAUI MAUI MAUI MAUI DADA2 DADA2 DADA2
Rank count rank UMI primary count UMI secondary count accepted rank count accepted
1 99431 1 7459 197 yes 1 54758 yes
2 86751 2 7067 155 yes 2 48402 yes
3 70318 3 3668 95 yes 3 44412 yes
4 47337 4 1898 106 yes 4 28339 yes
5 13190 8 229 71 yes 5 7854 yes
6 11786 9 118 103 no none NA no
7 10490 5 489 19 yes 6 6009 yes
8 9630 6 362 13 yes 7 5414 yes
9 4738 7 270 15 yes 8 2757 yes
10 4290 12 62 15 yes none NA no
11 3223 11 90 3 yes 9 2041 yes
20 1950 10 96 6 yes 10 981 yes
29 1504 13 42 10 yes none NA no
39 1063 14 35 2 yes 12 618 yes
41 946 none 0 0 11 721 yes
43 826 15 34 0 yes 13 434 yes
51 567 16 22 3 yes 14 341 yes
63 415 24 7 0 (yes) 15 208 yes