Table 2. Total number of detected sequence clusters in root nodule samples (Field-Samples-1) using MAUI-seq, DADA2, and UNOISE3 clustering and genetic differentiation between populations. Table 2. Total number of detected sequence clusters in root nodule samples (Field-Samples-1) using MAUI-seq, DADA2, and UNOISE3 clustering and genetic differentiation between populations. Table 2. Total number of detected sequence clusters in root nodule samples (Field-Samples-1) using MAUI-seq, DADA2, and UNOISE3 clustering and genetic differentiation between populations. Table 2. Total number of detected sequence clusters in root nodule samples (Field-Samples-1) using MAUI-seq, DADA2, and UNOISE3 clustering and genetic differentiation between populations. Table 2. Total number of detected sequence clusters in root nodule samples (Field-Samples-1) using MAUI-seq, DADA2, and UNOISE3 clustering and genetic differentiation between populations. Table 2. Total number of detected sequence clusters in root nodule samples (Field-Samples-1) using MAUI-seq, DADA2, and UNOISE3 clustering and genetic differentiation between populations. Table 2. Total number of detected sequence clusters in root nodule samples (Field-Samples-1) using MAUI-seq, DADA2, and UNOISE3 clustering and genetic differentiation between populations. Table 2. Total number of detected sequence clusters in root nodule samples (Field-Samples-1) using MAUI-seq, DADA2, and UNOISE3 clustering and genetic differentiation between populations.
Detected sequence clusters* Detected sequence clusters* Detected sequence clusters* Detected sequence clusters* Detected sequence clusters* FST
Gene Method Total Reference Exact BLAST Single nt Other
rpoB MAUI-seq 12 7 3 1 1 0.032
DADA2 15 7 3 3 2 0.032
UNOISE3 30 7 2 7 14 0.012
Reference 13 - - - - -
recA MAUI-seq 8 6 2 - - 0.110
DADA2 13 8 2 3 - 0.090
UNOISE3 14 5 2 2 5 0.028
Reference 17 - - - - -
nodA MAUI-seq 9 8 - 1 - 0.369
DADA2 18 12 1 1 4 0.191
UNOISE3 43 13 - 5 25 0.061
Reference 14 - - - - -
nodD MAUI-seq 18 11 1 2 4 0.139
DADA2 22 11 1 3 7 0.124
UNOISE3 57 11 1 4 41 0.031
Reference 16 - - - - -
All genes MAUI-seq 47 32 6 4 5 0.139
DADA2 68 38 7 10 13 0.105
UNOISE3 144 36 5 18 85 0.032