Abstract Multiple endocrine neoplasia type 1 (MEN1) is a rare autosomal dominant disorder characterized by a predisposition for tumors in the parathyroid gland, anterior hypophysis and pancreatic islet cells. Here we describe the first Costa Rican MEN1 case with a novel MEN1 mutation in a 37-year-old male with history of nephrolithiasis and recurrent hypoglycemic episodes. Initial laboratories revealed hypoglycemia and primary hyperparathyroidism. A fasting test was positive at three hours demonstrating hyperinsulinemic hypoglycemia. An abdominal CT SCAN showed one mass in the pancreatic tail and bilateral nephrolithiasis. Direct sequence analysis of MEN1 gene revealed heterozygosity for a novel pathogenic insertion c.1224_1225insGTCC (p.Cys409Valfs*41). Early genetic diagnosis of MEN1 could identify individuals in a presymptomatic stage of the disease which could introduce them in periodic surveillance protocol for early identification and treatment of associated tumors. Key words Multiple endocrine neoplasia-primary hyperparathyroidism-insulinoma-hypoglycemia-nephrolithiasis-endocrine and metabolic disorders-oncology-genetics. Clinical Key Message Molecular confirmation of clinical suspicious cases, may lead to new mutations in non-coding areas and will impact knowledge of the gene biology, patient follow-up, family members screening and improves our populational genetics understanding.