Notes : TEs (transposable elements), DNA (Class II TEs), LINE (long interspersed nuclear element), SINE (short interspersed nuclear element), LTR (long terminal repeats), RepBase TEs, TE Proteins, andDe novo indicated three methods for detecting genomic footprint of transposable elements (details see materials and methods). Combined TEs indicates results based on combined methods of RepBase TEs, TE Proteins, and De novo .