Notes : TEs (transposable elements), DNA (Class II TEs), LINE
(long interspersed nuclear element), SINE (short interspersed nuclear
element), LTR (long terminal repeats), RepBase TEs, TE Proteins, andDe novo indicated three methods for detecting genomic footprint
of transposable elements (details see materials and methods). Combined
TEs indicates results based on combined methods of RepBase TEs, TE
Proteins, and De novo .