Supplementary Figure 11: The transposable element content ofDrosophila innubila . A. Insertion frequency spectra for TEs in D. innubila separated by TE order and the location of insertion (e.g. coding region, non-coding, intronic). B.Principle component analysis (showing PCs 1 & 2) of TE insertions across D. innubila strains shows little population structure. Strains are labelled by their population (both shape and color).C. Mean TE insertion density per 1Mb window (sliding 1Mb) for each population of D. innubila, identified using PopoolationTE2. TE insertions are colored by their order.D. Proportion of the genome made up of repetitive content for each strain, as found with dnaPipeTE. Strains are ordered by total TE content from most to least, with bars colored by TE order.