Supplementary Table 1: Summary of Drosophila innubila fly’s DNA collected and sequenced for this study, including summary of coverage for X chromosome, autosomes. Also contains SRA accessions for each strain.
Supplementary Table 2: GLM for population genetic statistics in immune gene categories relative to the background for each population.
Supplementary Table 3: Summary of gene ontology enrichments for FST in each population, separated by processes, components and functions.
Supplementary Table 4: Summary of GLM for elevated McDonald-Krietman statistics GO categories in D. innubila .
Supplementary Table 5: Summary of gene ontology enrichments for DXY in each population.
Supplementary Data 1: VCF file for SNPs in D. innubila , used in estimation of population genetic statistics and in GWAS.
Supplementary Data 2: Population genetic statistics calculated for each gene in D. innubila using VCFtools for each population.
Supplementary Data 3: McDonald-Kreitman statistics calculated for each gene in D. innubila using SnIPRE for each population.