Supplementary Figure 11: The transposable element content ofDrosophila innubila . A. Insertion frequency spectra for
TEs in D. innubila separated by TE order and the location of
insertion (e.g. coding region, non-coding, intronic). B.Principle component analysis (showing PCs 1 & 2) of TE insertions
across D. innubila strains shows little population structure.
Strains are labelled by their population (both shape and color).C. Mean TE insertion density per 1Mb window (sliding 1Mb) for
each population of D. innubila, identified using
PopoolationTE2. TE insertions are colored by their order.D. Proportion of the genome made up of repetitive content for
each strain, as found with dnaPipeTE. Strains are ordered by total TE
content from most to least, with bars colored by TE order.