Bibliography
Aguillon, S. M., L. Campagna, R. G. Harrison, and I. J. Lovette. 2018. A flicker of hope: Genomic data distinguish Northern Flicker taxa despite low levels of divergence. The Auk.
Alexander, D. H., J. Novembre, and K. Lange. 2009. Fast model-based estimation of ancestry in unrelated individuals. Genome Research.
Bonhomme, M., C. Chevalet, B. Servin, S. Boitard, J. Abdallah, S. Blott, and M. SanCristobal. 2010. Detecting selection in population trees: The Lewontin and Krakauer test extended. Genetics.
Campagna, L., I. Gronau, L. F. Silveira, A. Siepel, and I. J. Lovette. 2015. Distinguishing noise from signal in patterns of genomic divergence in a highly polymorphic avian radiation. Molecular Ecology.
Campbell, C. R., J. W. Poelstra, and A. D. Yoder. 2018. What is Speciation Genomics? The roles of ecology, gene flow, and genomic architecture in the formation of species. Biological Journal of the Linnean Society.
Chiu, K. W., and P. F. A. Maderson. 1975. The microscopic anatomy of epidermal glands in two species of gekkonine lizards, with some observations on testicular activity. Journal of Morphology.
Cole, C. J. 1966. Femoral glands of the lizard, Crotaphytus collaris. Journal of Morphology.
De Kort, H., K. Vandepitte, H. H. Bruun, D. Closset-Kopp, O. Honnay, and J. Mergeay. 2014. Landscape genomics and a common garden trial reveal adaptive differentiation to temperature across Europe in the tree species Alnus glutinosa. Molecular Ecology.
Díaz, J. A. 1997. Ecological correlates of the thermal quality of an ectotherm’s habitat: A comparison between two temperate lizard populations. Functional Ecology.
Diaz, J. A., A. L. Alonzo-Gomez, and M. J. Delgado. 1994. Seasonal variation of gonadal development, sexual steroids, and lipid reserves in a population of the lizard Psammodromus algirus. Journal of Herpetology.
Díaz, J. A., J. Pérez-Tris, J. L. Tellería, R. Carbonell, and T. Santos. 2005. Reproductive investment of a lacertid lizard in fragmented habitat. Conservation Biology 19:1578–1585.
Díaz, J. A., J. Verdú-Ricoy, P. Iraeta, A. Llanos-Garrido, A. Pérez-Rodríguez, and A. Salvador. 2017. There is more to the picture than meets the eye: adaptation for crypsis blurs phylogeographical structure in a lizard. Journal of Biogeography.
Ellegren, H., L. Smeds, R. Burri, P. I. Olason, N. Backström, T. Kawakami, A. Künstner, et al. 2012. The genomic landscape of species divergence in Ficedula flycatchers. Nature.
Feulner, P. G. D., F. ééJ J. Chain, M. Panchal, Y. Huang, C. Eizaguirre, M. Kalbe, T. L. Lenz, et al. 2015. Genomics of Divergence along a Continuum of Parapatric Population Differentiation. PLoS Genetics.
Foll, M., and O. Gaggiotti. 2008. A genome-scan method to identify selected loci appropriate for both dominant and codominant markers: A Bayesian perspective. Genetics.
Groot, M. P., N. Wagemaker, N. J. Ouborg, K. J. F. Verhoeven, and P. Vergeer. 2018. Epigenetic population differentiation in field- and common garden-grown Scabiosa columbaria plants. Ecology and Evolution.
Harris, R. B., P. Alström, A. Ödeen, and A. D. Leaché. 2018. Discordance between genomic divergence and phenotypic variation in a rapidly evolving avian genus (Motacilla). Molecular Phylogenetics and Evolution.
Iraeta, P., C. Monasterio, A. Salvador, and J. A. Díaz. 2006. Mediterranean hatchling lizards grow faster at higher altitude: A reciprocal transplant experiment. Functional Ecology 20:865–872.
Iraeta, P., C. Monasterio, A. Salvador, and J. A. Díaz. 2011. Sexual dimorphism and interpopulation differences in lizard hind limb length:Locomotor performance or chemical signalling? Biological Journal of the Linnean Society.
Iraeta, P., A. Salvador, and J. A. Díaz. 2013. Life-history traits of two Mediterranean lizard populations: A possible example of countergradient covariation. Oecologia.
Iraeta, P., A. Salvador, C. Monasterio, and J. A. Díaz. 2010. Effects of gravidity on the locomotor performance and escape behaviour of two lizard populations: The importance of habitat structure. Behaviour.
Joo, J. W. J., E. Y. Kang, E. Org, N. Furlotte, B. Parks, F. Hormozdiari, A. J. Lusis, et al. 2016. Efficient and accurate multiple-phenotype regression method for high dimensional data considering population structure. Genetics.
Lawson, L. P., and K. Petren. 2017. The adaptive genomic landscape of beak morphology in Darwin’s finches. Molecular Ecology.
Llanos-Garrido, A., J. A. Díaz, A. Pérez-Rodríguez, and E. Arriero. 2017. Variation in male ornaments in two lizard populations with contrasting parasite loads. Journal of Zoology.
Martı́n, J., and A. Forsman. 1997. Social costs and development of nuptial coloration in male Psammodromus algirus lizards : an experiment. Behavioral Ecology 10:396–400.
McGirr, J. A., and C. H. Martin. 2018. Parallel evolution of gene expression between trophic specialists despite divergent genotypes and morphologies. Evolution Letters.
Moody, K. N., S. N. Hunter, M. J. Childress, R. W. Blob, H. L. Schoenfuss, M. J. Blum, and M. B. Ptacek. 2015. Local adaptation despite high gene flow in the waterfall-climbing Hawaiian goby, Sicyopterus stimpsoni. Molecular Ecology.
Nosil, P., D. J. Funk, and D. Ortiz-Barrientos. 2009. Divergent selection and heterogeneous genomic divergence. Molecular Ecology.
Palmer, D. H., and M. R. Kronforst. 2015. Divergence and gene flow among Darwin’s finches: A genome-wide view of adaptive radiation driven by interspecies allele sharing. BioEssays.
Phillips, B. L., G. P. Brown, J. M. J. Travis, and R. Shine. 2008. Reid’s Paradox Revisited: The Evolution of Dispersal Kernels during Range Expansion. The American Naturalist.
Poelstra, J. W., N. Vijay, C. M. Bossu, H. Lantz, B. Ryll, I. Müller, V. Baglione, et al. 2014. The genomic landscape underlying phenotypic integrity in the face of gene flow in crows. Science.
Purcell, S., B. Neale, K. Todd-Brown, L. Thomas, M. A. R. Ferreira, D. Bender, J. Maller, et al. 2007. PLINK: A Tool Set for Whole-Genome Association and Population-Based Linkage Analyses. The American Journal of Human Genetics.
Ravinet, M., R. Faria, R. K. Butlin, J. Galindo, N. Bierne, M. Rafajlović, M. A. F. Noor, et al. 2017. Interpreting the genomic landscape of speciation: a road map for finding barriers to gene flow. Journal of Evolutionary Biology.
Roff, D. A. 2007. Contributions of genomics to life-history theory. Nature Reviews Genetics.
Safran, R. J., E. S. C. Scordato, M. R. Wilkins, J. K. Hubbard, B. R. Jenkins, T. Albrecht, S. M. Flaxman, et al. 2016. Genome-wide differentiation in closely related populations: the roles of selection and geographic isolation. Molecular ecology.
Salvador, A., J. P. Veiga, J. Martin, P. Lopez, M. Abelenda, and M. Puerta. 1996. The cost of producing a sexual signal: Testosterone increases the susceptibility of male lizards to ectoparasitic infestation. Behavioral Ecology.
Shaner, P. J. L., T. H. Tsao, R. C. Lin, W. Liang, C. F. Yeh, X. J. Yang, F. M. Lei, et al. 2015. Climate niche differentiation between two passerines despite ongoing gene flow. Journal of Animal Ecology.
Tigano, A., and V. L. Friesen. 2016. Genomics of local adaptation with gene flow. Molecular Ecology.
Tigano, A., A. J. Shultz, S. V. Edwards, G. J. Robertson, and V. L. Friesen. 2017. Outlier analyses to test for local adaptation to breeding grounds in a migratory arctic seabird. Ecology and Evolution.
Trerotola, M., V. Relli, P. Simeone, and S. Alberti. 2015. Epigenetic inheritance and the missing heritability. Human genomics.
Verdú-Ricoy, J., S. Carranza, A. Salvador, S. D. Busack, and J. A. Díaz. 2010. Phylogeography of Psammodromus algirus (Lacertidae) revisited: Systematic implications. Amphibia Reptilia.