References
Amicizia, D., Zangrillo, F., Lai, P., Iovine, M., & Panatto, D. (2018). Overview of Japanese encephalitis disease and its prevention. Focus on IC51 vaccine (IXIARO®). Journal of preventive medicine and hygiene, 59 (1), E99.
Blaker, H. (2000). Confidence curves and improved exact confidence intervals for discrete distributions. Canadian Journal of Statistics, 28 (4), 783-798.
Borah, J., Dutta, P., Khan, S., & Mahanta, J. (2013). Epidemiological concordance of Japanese encephalitis virus infection among mosquito vectors, amplifying hosts and humans in India. Epidemiology & Infection, 141 (1), 74-80.
Campbell, G. L., Hills, S. L., Fischer, M., Jacobson, J. A., Hoke, C. H., Hombach, J. M., . . . Tsu, V. D. (2011). Estimated global incidence of Japanese encephalitis: a systematic review. Bulletin of the World Health Organization, 89 (10), 766-774.
Cappelle, J., Duong, V., Pring, L., Kong, L., Yakovleff, M., Prasetyo, D. B., . . . Ong, S. (2016). Intensive circulation of Japanese encephalitis virus in peri-urban sentinel pigs near Phnom Penh, Cambodia. PLOS Neglected Tropical Diseases, 10 (12), e0005149.
Dhanze, H., Bhilegaonkar, K., Rawat, S., Kumar, H. C., Kumar, A., Gulati, B., . . . Singh, R. (2019). Development of recombinant nonstructural 1 protein based indirect enzyme linked immunosorbent assay for sero-surveillance of Japanese encephalitis in swine. Journal of Virological Methods, 272 , 113705.
Dhanze, H., Bhilegaonkar, K. N., Kumar, C., Kumar, M. S., Singh, P., & Kumar, A. (2020). Development and evaluation of lateral flow assay for sero-diagnosis of Japanese encephalitis in swine. Animal Biotechnology, 31 (4), 350-356. doi:10.1080/10495398.2019.1602539
Dhanze, H., Bhilegaonkar, K. N., Rawat, S., Chethan, H. B., Kerketta, P., Dudhe, N., & Kumar, A. (2014). Seasonal sero-prevalence of Japanese encephalitis in swine using indirect IgG ELISA. J. Vet. Public Health, 12 (2), 103-105.
Dhanze, H., Kumar, M. S., Singh, V., Gupta, M., Bhilegaonkar, K. N., Kumar, A., . . . Singh, R. K. (2020). Detection of recent infection of Japanese encephalitis virus in swine population using IgM ELISA: a suitable sentinel to predict infection in humans. Journal of immunological methods, 486 , 112848.
Directorate of National Vector Borne Disease Control Programme. (2022). State-wise number of AES/JE Cases and Deaths from 2015-2022(till Nov). Retrieved from https://protect-au.mimecast.com/s/KRVJC3QNPBiX8V848ug7f9Q?domain=ncvbdc.mohfw.gov.in
Duong, V., Sorn, S., Holl, D., Rani, M., Deubel, V., & Buchy, P. (2011). Evidence of Japanese encephalitis virus infections in swine populations in 8 provinces of Cambodia: implications for national Japanese encephalitis vaccination policy. Acta Tropica, 120 (1-2), 146-150.
Gamer, M., Lemon, J., Gamer, M. M., Robinson, A., & Kendall’s, W. (2012). Package ‘irr’. Various coefficients of interrater reliability and agreement, 22 , 1-32.
Geevarghese, G., Shaikh, B., Jacob, P., & Bhat, H. (1994). Persistence of haemagglutination-inhibition antibodies to JE and WN viruses in naturally infected domestic pigs in Karnataka State, India. Acta Virologica, 38 (4), 235-237.
Grolemund, G., & Wickham, H. (2011). Dates and times made easy with lubridate. Journal of Statistical Software, 40 , 1-25.
Hyndman, R. J., & Khandakar, Y. (2008). Automatic time series forecasting: the forecast package for R. Journal of Statistical Software, 27 , 1-22.
Kanojia, P. C., Shetty, P. S., & Geevarghese, G. (2003). A long-term study on vector abundance & seasonal prevalence in relation to the occurrence of Japanese encephalitis in Gorakhpur district, Uttar Pradesh. Indian Journal of Medical Research, 117 , 104-110.
Khan, S., Narain, K., Handigue, R., Dutta, P., Mahanta, J., Satyanarayana, K., & Srivastava, V. (1996). Role of some environmental factors in modulating seasonal abundance of potential Japanese encephalitis vectors in Assam, India. The Southeast Asian journal of tropical medicine and public health, 27 (2), 382-391.
Kolhe, R., Bhilegaonkar, K., Dubbal, Z., Kaur, S., Das, S., & Agarwal, R. (2015). Indirect ELISA for serosurveillance of Japanese encephalitis in pigs. Indian Journal of Animal Research, 49 (3), 343-349.
Kumar, H. C., Dhanze, H., Bhilegaonkar, K., Chakurkar, E., Kumar, A., & Yathish, H. (2020). Serological evidence of Japanese encephalitis virus infection in pigs in a low human incidence state, Goa, India.Preventive veterinary medicine, 175 , 104882.
Kumari, R., & Joshi, P. L. (2012). A review of Japanese encephalitis in Uttar Pradesh, India. WHO South-East Asia Journal of Public Health, 1 (4), 374-395.
Ladreyt, H., Durand, B., Dussart, P., & Chevalier, V. (2019). How central is the domestic pig in the epidemiological cycle of Japanese encephalitis virus? A review of scientific evidence and implications for disease control. Viruses, 11 (10), 949.
Moore, S. M. (2021). The current burden of Japanese encephalitis and the estimated impacts of vaccination: Combining estimates of the spatial distribution and transmission intensity of a zoonotic pathogen.PLOS Neglected Tropical Diseases, 15 (10). doi:10.1371/journal.pntd.0009385
Mote, A. B., Mehta, D., Kumar, M. S., Gupta, M., Hussain, M., Patel, S. M., . . . Dhanze, H. (2023). Genotypic characterization of Japanese encephalitis virus circulating in swine population of India: Genotype-III still in dominance. Virus Genes, 59 (1), 67-78.
Murhekar, M., Vivian Thangaraj, J. W., Mittal, M., & Gupta, N. (2018). Acute encephalitis syndrome in Eastern Uttar Pradesh, India: changing etiological understanding. Journal of medical entomology, 55 (3), 523-526.
Pantawane, P., Dhanze, H., Verma, M., Singh, G., Kapdi, A., Chauhan, J., & Bhilegaonkar, K. (2017). Seasonal occurrence of Japanese encephalitis vectors in Bareilly district, Uttar Pradesh, India. Journal of Vector Borne Diseases, 54 (3), 270-276.
Peiris, J., Amerasinghe, F., Arunagiri, C., Perera, L., Karunaratne, S., Ratnayake, C., . . . Abeysinghe, M. (1993). Japanese encephalitis in Sri Lanka: comparison of vector and virus ecology in different agro-climatic areas. Transactions of the Royal Society of Tropical Medicine and Hygiene, 87 (5), 541-548.
R Core Team. (2022). R: A Language and Environment for Statistical Computing . In. Retrieved from http://www.R-project.org/
Rogan, W. J., & Gladen, B. (1978). Estimating prevalence from the results of a screening test. American Journal of Epidemiology, 107 (1), 71-76.
Ruget, A. S., Beck, C., Gabassi, A., Trevennec, K., Lecollinet, S., Chevalier, V., & Cappelle, J. (2018). Japanese encephalitis circulation pattern in swine of northern Vietnam and consequences for swine’s vaccination recommendations. Transboundary and Emerging Diseases, 65 (6), 1485-1492. doi:10.1111/tbed.12885
Signorell, A., Aho, K., Alfons, A., Anderegg, N., Aragon, T., Arppe, A., . . . Borchers, H. W. (2019). DescTools: Tools for descriptive statistics. R package version 0.99, 28 , 17.
Singh, A. K., Kharya, P., Agarwal, V., Singh, S., Singh, N. P., Jain, P. K., . . . Singh, R. K. (2020). Japanese encephalitis in Uttar Pradesh, India: A situational analysis. Journal of family medicine and primary care, 9 (7), 3716.
Singh, G., Agarwal, N., Singh, C., Pandey, S., Kumar, P., Singh, K., . . . Gupta, M. (2013). Time and place distribution of Acute Encephalitis Syndrome (AES) Japanese Encephalitis (JE) cases in Gorakhpur.Indian Journal of Community Health, 25 (1), 66-73.
Singh, H., Singh, N., & Mall, R. K. (2020). Japanese Encephalitis and Associated Environmental Risk Factors in Eastern Uttar Pradesh: A time series analysis from 2001 to 2016. Acta Tropica, 212 . doi:10.1016/j.actatropica.2020.105701
Srivastava, N., Deval, H., Mittal, M., Kant, R., & Bondre, V. P. (2021). The Outbreaks of Acute Encephalitis Syndrome in Uttar Pradesh, India (1978-2020) and Its Effective Management: A Remarkable Public Health Success Story. Front Public Health, 9 , 793268. doi:10.3389/fpubh.2021.793268
Stevenson, M., Nunes, T., Heuer, C., Marshall, J., Sanchez, J., Thornton, R., . . . Kyle, R. (2017). epiR: Tools for the analysis of epidemiological data (Version R package version 0.9-87). Retrieved from https://CRAN.R-project.org/package=epiR
Suresh, K. P., Nayak, A., Dhanze, H., Bhavya, A. P., Shivamallu, C., Achar, R. R., . . . Patil, S. S. (2022). Prevalence of Japanese encephalitis (JE) virus in mosquitoes and animals of the Asian continent: A systematic review and meta-analysis. JOURNAL OF INFECTION AND PUBLIC HEALTH, 15 (9), 942-949. doi:https://doi.org/10.1016/j.jiph.2022.07.010
Trapletti, A., & Hornik, K. (2016). tseries: Time Series Analysis and Computational Finance (Version R package version 0.10-35). Retrieved from http://CRAN.R-project.org/package=tseries
Van den Hurk, A. F., Ritchie, S. A., & Mackenzie, J. S. (2009). Ecology and geographical expansion of Japanese encephalitis virus. Annual Review of Entomology, 54 , 17-35.
Walsh, M. G., Pattanaik, A., Vyas, N., Saxena, D., Webb, C., Sawleshwarkar, S., & Mukhopadhyay, C. (2022). High-risk landscapes of Japanese encephalitis virus outbreaks in India converge on wetlands, rain-fed agriculture, wild Ardeidae, and domestic pigs and chickens.International Journal of Epidemiology . doi:10.1093/ije/dyac050
Wang, H., & Liang, G. (2015). Epidemiology of Japanese encephalitis: past, present, and future prospects. Therapeutics and Clinical Risk Management, 11 , 435-448. doi:10.2147/TCRM.S51168
Wickham, H. (2009). ggplot2: Elegant graphics for data analysis : New York, NY: Springer-Verlag
Wickham, H. (2011). The split-apply-combine strategy for data analysis.Journal of Statistical Software, 40 (1), 1-29.
Wickham, H. (2017). tidyverse: Easily install and load ‘tidyverse’ packages [computer program] (Version R package version 1.1.1). Retrieved from https://CRAN.R-project.org/package=tidyverse
World Health Organization. (2019, 9 May 2019). Japanese encephalitis. Retrieved from https://www.who.int/news-room/fact-sheets/detail/japanese-encephalitis
Table 1 Model specifications for seasonal autoregressive time series models of JEV seroprevalence in pigs sampled in eastern Uttar Pradesh, India, February 2013 – December 2022. AIC = Akaike information criterion. Final model = model 6.