Reference
- American Public Health Association, A.P.H.A. (1998). Standard Methods
for the Examination of Water and Wastewater. American Public Health
Association Inc., Washington, DC.
- Allan, J.D., (2004). Landscapes and riverscapes: the influence of land
use on stream ecosystems. Annu. Rev. Ecol. Syst. 35, 257–284.
- Anderson, M.J. et al. (2011). Navigating the multiple meanings of β
diversity: a roadmap for the practicing ecologist. Ecology
letters , 14, 19-28.
- Avolio, M.L. et al. (2014). Changes in plant community composition,
not diversity, during a decade of nitrogen and phosphorus additions
drive above‐ground productivity in a tallgrass prairie. Journal
of Ecology , 102, 1649-1660.
- Bayley, P. (1995). Understanding Large River-Floodplain Ecosystems:
Significant economic advantages and increased biodiversity and
stability would result from restoration of impaired systems.BioScience , 45, 153-158.
- Baselga A. (2010). Partitioning the turnover and nestedness components
of beta diversity. Global ecology and biogeography, 19, 134-143.
- Bunn, S.E. and Arthington, A.H. (2002). Basic principles and
ecological consequences of altered flow regimes for aquatic
biodiversity. Environmental management , 30, 492-507.
- Bürkner P. C. (2017). Advanced Bayesian multilevel modeling with the R
package brms. arXiv preprint arXiv , 1705.11123.
- Castello L, Macedo M. N. (2016). Large-scale degradation of Amazonian
freshwater ecosystems. Global Change Biology , 22, 990-1007.
- Carpenter B. et al. (2017). Stan: A probabilistic programming
language. Journal of statistical software , 76(1).
- Cadotte, M.W. et al. (2006). The effects of resource enrichment,
dispersal, and predation on local and metacommunity structure.Oecologia , 149, 150-157.
- Chase, J.M. et al. (2011). Using null models to disentangle variation
in community dissimilarity from variation in α-diversity.Ecosphere , 2, 1-11.
- Chase, J.M. and Myers, J.A. (2011). Disentangling the importance of
ecological niches from stochastic processes across scales.Philosophical transactions of the Royal Society B: Biological
sciences , 366, 2351-2363.
- Chase, J.M. et al. (2009). Predators temper the relative importance of
stochastic processes in the assembly of prey metacommunities.Ecology letters , 12, 1210-1218.
- Collins, S. L. et al. (2000). A method to determine rates and patterns
of variability in ecological communities. Oikos , 91, 285-293.
- Collins, S.L. et al. (2008). Rank clocks and plant community dynamics.Ecology , 89, 3534-3541.
- Cook, S.C. et al. (2018). Freshwater eutrophication drives sharp
reductions in temporal beta diversity. Ecology , 99, 47-56.
- Cottenie, K. (2005). Integrating environmental and spatial processes
in ecological community dynamics. Ecology letters , 8,
1175-1182.
- Daniel, J. et al. (2019). Stochastic and deterministic processes drive
wetland community assembly across a gradient of environmental
filtering. Oikos , 128, 1158-1169.
- Death, R.G. and Winterbourn, M.J., (1994). Environmental stability and
community persistence: a multivariate perspective. Journal of
the North American Benthological Society , 13, 125-139.
- Dini-Andreote, F. et al. (2015). Disentangling mechanisms that mediate
the balance between stochastic and deterministic processes in
microbial succession. Proceedings of the National Academy of
Sciences , 112, 1326-1332.
- Dirzo, R. et al. (2014). Defaunation in the Anthropocene.Science , 345, 401-406.
- Donohue, I. et al. (2009). Nutrient enrichment homogenizes lake
benthic assemblages at local and regional scales. Ecology , 90,
3470-3477.
- Dray, S. et al. (2016). adespatial: Multivariate multiscale spatial
analysis. R package version 0.0 , 3 .
- Economo, E.P. (2011). Biodiversity conservation in metacommunity
networks: linking pattern and persistence. The American
Naturalist , 177, 167-180.
- Fontenot Q. C. et al . (2001). Effects of Environmental Hypoxia
Associated with the Annual Flood Pulse on the Distribution of Larval
Sunfish and Shad in the Atchafalaya River Basin, Louisian.Transactions of the American Fisheries Society , 130, 107-116.
- Guan L. et al . (2016).
Optimizing the timing of water level recession for conservation of
wintering geese in Dongting Lake, China. Ecological
Engineering , 88, 90-98.
- Garcia-Moreno, J. et al. (2014). Sustaining freshwater biodiversity in
the Anthropocene. In: The global water system in the
Anthropocene, [ed(s).] [Bhaduri A., Bogardi J., Leentvaar J.,
Marx S.]. Springer, Cham, 247-270.
- Gaston, K.J. and Chown, S.L. (2005). Neutrality and the niche.Functional Ecology , 19, 1-6.
- Gelman, A. et al. (2019). R-squared for Bayesian regression models.The American Statistician , 73, 307-309.
- Goldwyn, E.E. and Hastings, A., (2008). When can dispersal synchronize
populations?. Theoretical population biology , 73(3),
pp.395-402.
- Gonzalez, A. and Loreau, M., 2009. The causes and consequences of
compensatory dynamics in ecological communities. Annu. Rev.
Ecol. Evol. Syst. , 40, 393-414.
- Gonzalez, A. et al. (2016). Estimating local biodiversity change: a
critique of papers claiming no net loss of local diversity.Ecology , 97, 1949-1960.
- Gotelli, N.J. et al. (2000). Null model analysis of species
co-occurrence patterns. Ecology , 81, 2606-2621.
- Gouhier, T.C. and Guichard, F. (2014). Synchrony: quantifying
variability in space and time. Methods in Ecology and
Evolution , 5, 524-533.
- Gravel, D. et al. (2006). Reconciling niche and neutrality: the
continuum hypothesis. Ecology letters , 9, 399-409.
- Hallett, L.M. et al. (2014). Biotic mechanisms of community stability
shift along a precipitation gradient. Ecology , 95, 1693-1700.
- Hallett, L.M. et al. (2016). codyn: an R package of community dynamics
metrics. Methods in Ecology and Evolution , 7, 1146-1151.
- Heino J et al. (2015). Metacommunity organisation, spatial extent and
dispersal in aquatic systems: patterns, processes, and prospects.Freshwater Biology , 60, 845–869.
- Hubbell SP. (2001). The Unified Neutral Theory of Biodiversity
and Biogeography . Princeton University Press, Princeton.
- Huttunen, K.L. (2020). Excess of nitrogen reduces temporal variability
of stream diatom assemblages. Science of The Total Environment ,
713, 136630.
- Iacarella J. C. et al.(2018). Anthropogenic disturbance homogenizes
seagrass fish communities. Global change biology , 24,
1904-1918.
- Jones, S.K. et al. (2017). Species reordering, not changes in
richness, drives long-term dynamics in grassland communities.Ecology letters , 20, 1556-1565.
- Johnson, R. K., and Angeler, D. G. (2014). Effects of agricultural
land use on stream assemblages: Taxon-specific responses of alpha and
beta diversity. Ecological Indicators , 45, 386-393.
- Jia Y. et al. (2020). Processes shaping wintering waterbird
communities in an intensive modified landscape: Neutral assembly with
dispersal limitation and localized competition. Ecological
Indicators. 114, 106330.
- Kupferberg S. J. et al. (2012).
Effects of flow regimes altered by dams on survival, population
declines, and range-wide losses of California river-breeding frogs.Conservation Biology , 26, 513-524.
- Kéfi, S. et al. (2019). Advancing our understanding of ecological
stability. Ecology letters , 22, 1349-1356.
- King, A.J. et al. (2003). Fish recruitment on floodplains: the roles
of patterns of flooding and life history characteristics.Canadian Journal of Fisheries and Aquatic Sciences , 60,
773-786.
- King, A. J. et al. (2012). Short-term effects of a prolonged
blackwater event on aquatic fauna in the Murray River, Australia:
considerations for future events. Marine and Freshwater
Research , 63, 576-586.
- Korhonen, J.J. et al. (2010). A quantitative analysis of temporal
turnover in aquatic species assemblages across ecosystems.Ecology , 91, 508-517.
- Kopp J. F. et al. (1983).
Methods for chemical analysis of water and wastewater. United States
Environmental Protection Agency: Washington, DC.
- Lu C. et al . (2018). Shifts in river-floodplain relationship
reveal the impacts of river regulation: A case study of Dongting Lake
in China. Journal of Hydrology , 2018, 559, 932-941.
- Li, B. et al. (2020). Anthropogenic habitat alternation
significantly decreases α- and β-diversity of benthopelagic
metacommunity in a large floodplain lake. Hydrobiologia 847,
293–307.
- Leibold, M.A. et al. (2004). The metacommunity concept: a framework
for multi-scale community ecology. Ecology letters , 7, 601-613.
- Legendre P. and De Cáceres M. Beta diversity as the variance of
community data: dissimilarity coefficients and partitioning.Ecology letters , 2013, 16, 951-963.
- Legendre, P., 2019. A temporal beta‐diversity index to identify sites
that have changed in exceptional ways in space–time surveys.Ecology and Evolution , 9, 3500-3514.
- Levi, T. et al. (2019). Tropical forests can maintain hyperdiversity
because of enemies. Proceedings of the National Academy of
Sciences , 116, 581-586.
- Loreau, M. and de Mazancourt, C.
(2008). Species synchrony and its drivers: neutral and nonneutral
community dynamics in fluctuating environments. The American
Naturalist , 172, 48-66.
- Magurran, A.E. et al. (2019). Temporal β diversity—A macroecological
perspective. Global Ecology and Biogeography , 28, 1949-1960.
- Magurran, A.E. (2018). Divergent biodiversity change within
ecosystems. Proceedings of the National Academy of Sciences ,
115, 1843-1847.
- McGill, B.J. (2003). A test of the unified neutral theory of
biodiversity. Nature , 422, 881-885.
- McGill, B.J. et al. (2015). Fifteen forms of biodiversity trend in the
Anthropocene. Trends in ecology & evolution , 30, 104-113.
- McManamay, R.A. and Frimpong, E.A., (2015). Hydrologic filtering of
fish life history strategies across the United States: implications
for stream flow alteration. Ecological Applications , 25,
243-263.
- Mims, M.C. and Olden, J.D., (2012). Life history theory predicts fish
assemblage response to hydrologic regimes. Ecology , 93, 35-45.
- Mori, A.S. et al. (2013). Community assembly processes shape an
altitudinal gradient of forest biodiversity. Global Ecology and
Biogeography , 22, 878-888.
- Mori, A.S. et al. (2015). Null
model approaches to evaluating the relative role of different assembly
processes in shaping ecological communities. Oecologia , 178,
261-273.
- Mori, A.S. et al. (2018). β-diversity, community assembly, and
ecosystem functioning. Trends in Ecology & Evolution , 33,
549-564.
- Musters, C.J.M. et al.(2019), Spatial and temporal homogenisation of
freshwater macrofaunal communities in ditches. Freshwater
Biology , 64, 2260-2268.
- Ning, D. et al. (2019). A general framework for quantitatively
assessing ecological stochasticity. Proceedings of the National
Academy of Sciences , 116, 16892-16898.
- Olden J. D. and Naiman R. J. (2010). Incorporating thermal regimes
into environmental flows assessments: modifying dam operations to
restore freshwater ecosystem integrity. Freshwater Biology ,
2010, 55, 86-107.
- Palmer, M. and Ruhí, A. (2019). Linkages between flow regime, biota,
and ecosystem processes: Implications for river restoration.Science , 365, 2087.
- Poff L. R. et al . (1997). The Natural Flow Regime: A Paradigm
for River Conservation and Restoration. BioSicence , 47,
769-784.
- Poff L. R. et al . (2006). Hydrologic variation with land use
across the contiguous United States: Geomorphic and ecological
consequences for stream ecosystems. Geomorphology, 79, 264-285.
- Pander, J. et al. (2015). Succession of fish diversity after
reconnecting a large floodplain to the upper Danube River.Ecological engineering , 75, 41-50.
- Quintero, C. et al. (2010). Effects of anthropogenic habitat
disturbance on local pollinator diversity and species turnover across
a precipitation gradient. Biodiversity and Conservation , 19,
257-274.
- Reid, A.J., et al . (2019). Emerging threats and
persistent conservation challenges for freshwater biodiversity.Biological Reviews , 94, 849-873.
- Rosset, V. et al. (2017). Do lentic and lotic communities respond
similarly to drying?. Ecosphere , 8(7), p.e01809.
- Ruhí, A. et al. (2017). Interpreting beta-diversity components over
time to conserve metacommunities in highly dynamic ecosystems.Conservation Biology , 31, 1459-1468.
- Rosindell, J. et al. (2012). The case for ecological neutral theory.Trends in ecology & evolution , 27, 203-208.
- Stewart G, and Harper B. (2002). Barmah-Millewa forest environmental
water allocation. Water Science and Technology , 45, 217-223.
- Shaw, A.K., 2016. Drivers of animal migration and implications in
changing environments. Evolutionary Ecology , 30, 991-1007.
- Shoemaker, L.G. et al. (2020). Integrating the underlying structure of
stochasticity into community ecology. Ecology , 101, 02922.
- Silvertown, J. (2004). Plant coexistence and the niche. Trends
in Ecology & evolution , 19, 605-611.
- Schluter, D. (1984). A variance test for detecting species
associations, with some example applications. Ecology , 65,
998–1005.
- Tilman, D. 1999. The Ecological Consequences of Changes in
Biodiversity: A Search for General Principles. Ecology. 80,
1455-1474.
- Tilman, D., et al. (2006). Biodiversity and ecosystem stability in a
decade-long grassland experiment. Nature, 441, 629–632.
- Tucker, C.M. et al. (2016). Differentiating between niche and neutral
assembly in metacommunities using null models of β-diversity.Oikos , 125, 778-789.
- Vörösmarty, C. et al . (2010). Erratum: Global threats to human
water security and river biodiversity.Nature , 467, 555-561.
- Vellend, M. et al. (2014). Assessing the relative importance of
neutral stochasticity in ecological communities. Oikos , 123,
1420-1430.
- Vellend, M. et al. (2017). Estimates of local biodiversity change over
time stand up to scrutiny. Ecology , 98, 583-590.
- Vehtari A, et al. (2017). Practical Bayesian model evaluation using
leave-one-out cross-validation and WAIC. Statistics and
computing , 2017, 27, 1413-1432.
- Vogwill T. et al. (2009). Dispersal and natural enemies interact to
drive spatial synchrony and decrease stability in patchy populations.Ecology Letters , 12, 1194-1200.
- Wood S. N. (2006). Low‐rank scale‐invariant tensor product smooths for
generalized additive mixed models. Biometrics , 62, 1025-1036.
- Xia, S. et al . (2017). Restriction of Herbivorous Waterbird
Distributions in the Middle and Lower Yangtze River Floodplain in View
of Hydrological Isolation. Wetlands, 37, 79–88.
- Xu, X. et al. (2018). Ecosystem services trade-offs and determinants
in China’s Yangtze River Economic Belt from 2000 to 2015.Science of the Total Environment , 634 , 1601-1614.
- Yurkonis, K.A. et al. (2005). Invasion impacts diversity through
altered community dynamics. Journal of ecology , 93, 1053-1061.
- Zhou, J. et al. (2014). Stochasticity, succession, and environmental
perturbations in a fluidic ecosystem. Proceedings of the
National Academy of Sciences , 111, 836-845.
- Zhou, M. et al. (2020). Plant community temporal stability in response
to nitrogen addition among different degraded grasslands.Science of The Total Environment , 729, 138886.