|
Gene set |
Number |
Average transcript length(bp) |
Average CDS
length(bp) |
Average exons per gene |
Average exon length(bp) |
Average
intron length(bp) |
De novo |
Augustus |
44,493 |
5,661.67 |
884.59 |
3.59 |
246.65 |
1,847.03 |
|
GlimmerHMM |
142,367 |
5,202.15 |
507.15 |
2.50 |
202.98 |
3,133.17 |
|
SNAP |
77,306 |
11,939.92 |
686.97 |
3.91 |
175.53 |
3,862.21 |
|
Geneid |
28,958 |
20,269.88 |
746.01 |
5.01 |
148.93 |
4,869.99 |
|
Genscan |
39,969 |
14,596.29 |
1,372.20 |
4.97 |
275.99 |
3,329.43 |
Homology |
Cel |
8,768 |
2,761.53 |
803.49 |
2.55 |
315.45 |
1,265.61 |
|
Cgi |
29,696 |
2,040.56 |
787.48 |
1.98 |
397.52 |
1,277.38 |
|
Dme |
10,815 |
4,260.04 |
891.58 |
3.24 |
275.13 |
1,503.38 |
|
Dpu |
31,971 |
2,131.13 |
571.79 |
2.04 |
279.70 |
1,493.25 |
|
Hsa |
13,798 |
3,503.53 |
869.14 |
2.86 |
303.93 |
1,416.63 |
|
Isc |
47,137 |
1,287.92 |
567.46 |
1.58 |
360.28 |
1,252.86 |
|
Ptep |
23,660 |
2,639.54 |
836.84 |
2.27 |
368.69 |
1,419.70 |
|
Pva |
26,412 |
3,766.29 |
935.76 |
3.10 |
302.06 |
1,349.24 |
|
Spu |
15,073 |
2,878.81 |
1,023.85 |
2.39 |
428.30 |
1,334.03 |
|
Tca |
22,091 |
3,009.75 |
981.52 |
2.51 |
390.59 |
1,340.60 |
|
Tur |
18,806 |
2,754.58 |
914.90 |
2.20 |
416.34 |
1,536.27 |
RNAseq |
PASA |
44,920 |
13,768.62 |
1,389.51 |
6.28 |
221.40 |
2,346.33 |
|
Cufflinks |
56,571 |
18,303.84 |
3,099.64 |
6.63 |
467.53 |
2,700.67 |
EVM |
EVM |
23,993 |
8,599.08 |
1,147.41 |
4.49 |
255.33 |
2,132.77 |
Pasa-update* |
Pasa-update* |
23,395 |
9,475.94 |
1,219.26 |
4.76 |
256.30 |
2,197.63 |
Final set* |
Final set* |
19,981 |
10,484.05 |
1,231.18 |
5.22 |
236.02 |
2,194.55 |