Type |
Repeatmasker |
|
|
|
|
|
(Repbase+Denovo) |
Repeatmasker |
|
|
|
|
|
(Repbase+Denovo) |
TE protiens |
TE protiens |
Combined TEs |
|
|
|
(all without TRF) |
Combined TEs |
|
|
|
|
|
(all without TRF) |
|
|
|
|
|
|
|
Length (bp) |
% in genome |
Length (bp) |
% in genome |
Length (bp) |
% in
genome |
DNA |
88,177,866 |
10.20 |
7,698,813 |
0.89 |
94,695,859 |
10.95 |
LINE |
205,758,594 |
23.80 |
90,240,215 |
10.44 |
235,904,361 |
27.29 |
SINE |
134,806 |
0.02 |
0 |
0 |
134,806 |
0.02 |
LTR |
142,449,802 |
16.48 |
15,507,775 |
1.79 |
147,540,995 |
17.07 |
Others |
38 |
0.000004 |
0 |
0 |
38 |
0.000004 |
Unknown |
7,689,177 |
0.89 |
0 |
0 |
7,689,177 |
3.42 |
Total |
392,875,521 |
45.45 |
113,294,828 |
13.11 |
406,978,948 |
47.08 |