Figure 1. Detection of pathogens. A. Total detections in the 799 specimens. Blue = mono-infections and red = co-infections.B. Specific pathogens detected. Graph shows percent detected in mono- (blue) versus co-infections (red). The total number of detections (N) for each pathogen (inclusive of mono- and co-infections).C. 16 specimens had co-infections detected (32 pathogens total). The heatmap shows the number of co-infections. Each pathogen is plotted with all other pathogens detected from the 799 specimens. Number of co-infections detected white = 0, grey = 1, black = 2, red = 3.
Figure 2. Geographic analysis. A-D. Detections at each site. A. Johns Hopkins Hospital (JHH), B. Truman Medical Center (TMC), C. Maricopa Medical Center (MMC), D. Olive-View UCLA Medical (OVM). Top pie charts show total detections broken down by mono-infections (blue) and co-infections (red). Bottom pie charts show the distribution of pathogens detected at each site.
Figure 3. Temporal analysis. Graphs show each pathogen that had N > 20 detections across all 4 sites. X-axis is time, Y-axis is % of the total pathogens. JHH = blue lines, TMC = red lines, MMC = black lines, and OVM = purple lines