Figure 1. Detection of pathogens. A. Total detections in the
799 specimens. Blue = mono-infections and red = co-infections.B. Specific pathogens detected. Graph shows percent detected in
mono- (blue) versus co-infections (red). The total number of detections
(N) for each pathogen (inclusive of mono- and co-infections).C. 16 specimens had co-infections detected (32 pathogens
total). The heatmap shows the number of co-infections. Each pathogen is
plotted with all other pathogens detected from the 799 specimens. Number
of co-infections detected white = 0, grey = 1, black = 2, red = 3.
Figure 2. Geographic analysis. A-D. Detections at each site. A.
Johns Hopkins Hospital (JHH), B. Truman Medical Center (TMC), C.
Maricopa Medical Center (MMC), D. Olive-View UCLA Medical (OVM). Top pie
charts show total detections broken down by mono-infections (blue) and
co-infections (red). Bottom pie charts show the distribution of
pathogens detected at each site.
Figure 3. Temporal analysis. Graphs show each pathogen that had
N > 20 detections across all 4 sites. X-axis is time,
Y-axis is % of the total pathogens. JHH = blue lines, TMC = red lines,
MMC = black lines, and OVM = purple lines