REFERENCES
Alexandros, & Stamatakis. (2006).
RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with
thousands of taxa and mixed models. Bioinformatics, 22 ,
2688-2690.
Azinna, R., HirokiGotoh,
TakaakiKojima, & TeruyukiNiimi. (2018). Recent advances in
understanding the mechanisms of sexually dimorphic plasticity: insights
from beetle weapons and future directions. Current Opinion in
Insect Science, 25 , 35-41.
Barbora, K., Vlastimil, S., Marek, J.,
& Amit, S. (2011). Common and Distinct Roles of Juvenile Hormone
Signaling Genes in Metamorphosis of Holometabolous and Hemimetabolous
Insects. PLoS One, 6 (12), e28728-.
Belles, X. (2011). Origin and
Evolution of Insect Metamorphosis : John Wiley & Sons, Ltd.
Consortium, H. G. S. (2006). Honey Bee
Genome Sequencing Consortium. Insights into social insects from the
genome of the honeybee Apis mellifera. Nature, 444 (7118),
512-512.
Feyereisen, R., & Tobe, S. S. (1981).
A rapid partition assay for routine analysis of juvenile hormone release
by insect corpora allata. Analytical Biochemistry, 111 (2),
372-375.
Gilbert, L. I. (1994). Insect
Hormones (Vol. 39): Princeton Univ. Press.
Hao, F., Conneely, K. N., & Hao, W.
(2014). A Bayesian hierarchical model to detect differentially
methylated loci from single nucleotide resolution sequencing data.Nucleic Acids Research, 8 (8), 8.
Harris, R. M., & Hofmann, H. A.
(2004). Seeing is believing: Dynamic evolution of gene families: Fig. 1.Proceedings of the National Academy of Sciences of the United
States of America, 112 (5), 1252-1253.
Helvig, C., Koener, J. F., Unnithan,
G. C., & Feyereisen, R. (2004). CYP15A1, the cytochrome P450 that
catalyzes epoxidation of methyl farnesoate to juvenile hormone III in
cockroach corpora allata. Proc Natl Acad Sci U S A, 101 (12),
4024-4029.
Kelly, T. J., Masler, E. P.,
Thyagaraja, B. S., Bell, R. A., & Imberski, R. B. (1992). Development
of an in vitro assay for prothoracicotropic hormone of the gypsy
moth,Lymantria dispar(L.) following studies on identification, titers
and synthesis of ecdysteroids in last-instar females. Journal of
Comparative Physiology Biochemical Systemic and Environmental
Physiology, 162 (7), 581-587.
Kristensen, N. P. (1975). The
phylogeny of hexapod “orders”. A critical review of recent accounts.Journal of Zoological Systematics & Evolutionary Research,
13 (1), 1-44.
Krueger, F., & Andrews, S. R.
(2011). Bismark: a flexible aligner and methylation caller for
Bisulfite-Seq applications. Bioinformatics, 27 (11), 1571-1572.
Kunst, L., & Samuels, A. L. (2003).
Biosynthesis and secretion of plant cuticular wax. Progress in
Lipid Research, 42 (1), 51-80.
Langmead, B., & Salzberg, S. L.
(2012). Fast gapped-read alignment with Bowtie 2. Nat Methods,
9 (4), 357-359.
Lespinet, O., Wolf, Y. I., Koonin, E.
V., & Aravind, L. (2002). The role of lineage-specific gene family
exapnsion in the evolution of eukryotes. Genome Research, 12 ,
1048-1059.
Lyko, F., Foret, S., Kucharski, R.,
Wolf, S., Falckenhayn, C., & Maleszka, R. (2011). The honey bee
epigenomes: differential methylation of brain DNA in queens and workers.PLoS Biol, 9 (1), e1000506.
Ma, J., Liyi, M., Hong, Z.,
Zhongquan, Z., Youqiong, W., Kai, L., . . . A., L. D. (2018).
Policosanol fabrication from insect wax and optimization by response
surface methodology. PLoS One, 13 (5), e0197343-.
Ma, J., Ma, L., Zhang, Z., Li, K., &
Zhang, H. (2018). In vivo evaluation of insect wax for hair growth
potential. PLoS One, 13 (2), e0192612.
Mao, X., Tao, C., Olyarchuk, J. G.,
& Wei, L. (2005). Automated genome annotation and pathway
identification using the KEGG Orthology (KO) as a controlled vocabulary.Bioinformatics, 21 (19), 3787-3793.
Misof, B., Liu, S., Meusemann, K.,
Peters, R. S., & Xin, Z. (2014). Phylogenomics resolves the timing and
pattern of insect evolution. Science, 346 (6210), 763-767.
Morales-Cruz, A., Amrine, K. C. H.,
Blanco-Ulate, B., Lawrence, D. P., Travadon, R., Rolshausen, P. E., . .
. Cantu, D. (2015).
Distinctive
expansion of gene families associated with plant cell wall degradation,
secondary metabolism, and nutrient uptake in the genomes of grapevine
trunk pathogens. BMC Genomics, 16 , 469.
Nel, A., Roques, P., Nel, P., Prokin,
A. A., Bourgoin, T., Prokop, J., . . . Wappler, T. (2013). The
earliest-known holometabolous insects. Nature, 503 (7475).
Oliva, R. F., Cano, L. M., Raffaele,
S., Win, J., Bozkurt, T. O., Belhaj, K., . . . Kamoun, S. (2015). A
Recent Expansion of the RXLR Effector Gene Avrblb2 Is Maintained in
Global Populations of Phytophthora infestans Indicating Different
Contributions to Virulence. Mol. Plant-Microbe Interact, 28 (8),
901.
Park, Y., & Wu, H. (2016).
Differential methylation analysis for BS-seq data under general
experimental design. Bioinformatics, 32 (10), 1-10.
Phalke, S., Nickel, O., Walluscheck,
D., Hortig, F., Onorati, M. C., & Reuter, G. (2009). Retrotransposon
silencing and telomere integrity in somatic cells of Drosophila depends
on the cytosine-5 methyltransferase DNMT2. Nature Genetics,
41 (6), 696-702.
Qi Q, Lv P, Chen X-M, Chen H, Chen
M-S, Yang P. 2019. Sexual Dimorphism in Wax Secretion Offers Ecological
Adaptability During Ericerus pela (Hemiptera: Coccidae) Evolution.
Environmental Entomology 48: 410-418.
Rays H. Y. Jiang , Irene de Bruijn , Brian J. Haas , Rodrigo Belmonte,
Lars Löbach, James Christie, . . . West, P. v. (2013). Distinctive
Expansion of Potential Virulence Genes in the Genome of the Oomycete
Fish Pathogen Saprolegnia parasitica. Plos Genetics, 9 (6),
e1003272.
Regev, A., Lamb, M. J., & Jablonka,
E. (1998). The role of DNA methylation in invertebrates: Developmental
regulation or genome defense? Mol. Biol. Evol., 15 (7),
880–891.
Riddiford, L. M. (2008). Juvenile
hormone action: A 2007 perspective. Journal of Insect Physiology,
54 (6), 895-901.
Robinson, G. E., Hackett, K. J.,
Purcell-Miramontes, M., Brown, S. J., Evans, J. D., Goldsmith, M. R., .
. . Schneider, D. J. (2011). Creating a Buzz About Insect Genomes.Science, 331 (6023), 1386-1386.
Slama, K., & Williams, C. M. (1965).
Juvenile hormone activity for the bug Pyrrhocoris apterus.Proceedings of the National Academy of Sciences, 54 , 411-414.
Stillwell, R. C., Blanckenhorn, W.
U., Teder, T., Davidowitz, G., & Fox, C. W. (2010). Sex Differences in
Phenotypic Plasticity Affect Variation in Sexual Size Dimorphism in
Insects: From Physiology to Evolution. Annual Review of
Entomology, 55 , 227-245.
Tamura, K., Peterson, D., Peterson,
N., Stecher, G., Nei, M., & Kumar, S. (2011). MEGA5: Molecular
Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary
Distance, and Maximum Parsimony Methods. Mol. Biol. Evol.,
28 (10), 2731-2739.
Teerawanichpan, P., Robertson, A. J.,
& Qiu, X. (2010). A fatty acyl-CoA reductase highly expressed in the
head of honey bee (Apis mellifera) involves biosynthesis of a wide range
of aliphatic fatty alcohols. Insect Biochemistry Molecular
Biology, 40 (9), 0-649.
Truman, J. W., & Riddiford, L. M.
(1999). The origins of insect metamorphosis. Nature, 401 (6752),
447-452.
Vea, I. M., Tanaka, S., Shiotsuki,
T., Jouraku, A., Tanaka, T., & Minakuchi, C. (2016). Differential
Juvenile Hormone Variations in Scale Insect Extreme Sexual Dimorphism.PLoS One, 11 (2), e0149459.
Wang X, Fang X, Yang P, Jiang X,
Jiang F, Zhao D, Li B, Cui F, Wei J, Ma C et al. 2014. The locust genome
provides insight into swarm formation and long-distance flight Nature
Communications 5: 1-9.
Wang, Z. D., Feng, Y., Ma, L.-y., Li, X., Ding, W.-f., & Chen, X.-m.
(2017). Hair growth promoting effect of white wax and policosanol from
white wax on the mouse model of testosterone-induced hair loss.Biomedicine & Pharmacotherapy, 89 , 438-446.
Williams, T. M., & Carrol, S. B.
(2009). Genetic and molecular insights into the development and
evolution of sexual dimorphism. Nature Reviews Genetics, 10 ,
797-804.
Wu, H., Xu, T., Feng, H., Chen, L.,
Li, B., Yao, B., . . . Conneely, K. N. (2015). Detection of
differentially methylated regions from whole-genome bisulfite sequencing
data without replicates. Nucleic Acids Researc, 43 (21), 141.
Xia, Q., Zhou, Z., Lu, C., Cheng, D.,
Dai, F., Li, B., . . . Ma, C. (2004). A Draft Sequence for the Genome of
the Domesticated Silkworm (Bombyx mori). Science, 306 (5703),
1937-1940.
Xiang, H., Zhu, J., Chen, Q., Dai,
F., Li, X., Li, M., . . . Dong, Y. (2010). Single base–resolution
methylome of the silkworm reveals a sparse epigenomic map. Nature
Biotechnology, 28 (5), 516-520.
Young, M. D., Wakefield, M. J.,
Smyth, G. K., & Oshlack, A. (2010).
Gene
ontology analysis for RNA-seq: accounting for selection bias.Genome Biol., 11 (2), 1-12.
Zhao, C., NavarroEscalante, L.,
HangChen, R.Benatti, T., Qu, J., Chellapilla, S., . . . MarcusCoyle.
(2015). A Massive Expansion of Effector Genes Underlies Gall-Formation
in the Wheat Pest Mayetiola destructor. Current Biology, 25 (5),
613-620.