2.4 ∣ Chromosome conformation capture sequencing (Hi-C)
The Hi-C libraries were sequenced on the Illumina HiSeq X Ten platform
(San Diego, CA, United States) with 150PEmode. Subsequently, the Hi-C
sequencing data were aligned to the assembled scaffolds by BWA-mem50
(bwa-0.7.17) and the scaffolds were clustered onto chromosomes with
LACHESIS
(http://shendurelab.github.io/LACHESIS/),
the final genome was 638.30Mb and the contig and scaffold N50 were
631.79Mb and 69.68Mb, respectively (Tables 1 and Supplementary Tables
9).