References
Bandelt HJ, Forster P, Röhl A. 1999. Median-joining networks for inferring intraspecific phylogenies. Molecular Biology and Evolution 16:37-48 DOI: 10.1093/oxfordjournals.molbev.a026036.
Borzée A, Santos JL, Sanchez-RamIrez S, Bae Y, Heo K, Jang Y, Jowers MJ. 2017. Phylogeographic and population insights of the Asian common toad (Bufo gargarizans ) in Korea and China: population isolation and expansions as response to the ice ages. PeerJ 5:e4044 DOI: 10.7717/peerj.4044.
Cantor T. 1842. LIII.—General features of Chusan, with remarks on the flora and fauna of that island. Journal of Natural History9:481-493.
Chen CC, Li KW, Yu TL, Chen LH, Sheu PY, Tong YW, Huang KJ, Weng CF. 2013. Genetic structure of Bufo bankorensis distinguished by amplified restriction fragment length polymorphism of cytochromeb . Zoological Studies 52:48 DOI: 10.1186/1810-522X-52-48.
Cheng CS, Wang J, Chen J, Kuo KT, Tang J, Gao H, Chen L, Chen Z, Meng Z. 2019. New therapeutic aspects of steroidal cardiac glycosides: the anticancer properties of Huachansu and its main active constituent Bufalin. Cancer Cell International 19:92 DOI: 10.1186/s12935-019-0806-1.
Drummond AJ, Suchard MA, Xie D, Rambaut A. 2012. Bayesian phylogenetics with BEAUti and the BEAST 1.7. Molecular Biology and Evolution29:1969-1973 DOI: 10.1093/molbev/mss075.
Du Z, Ishikawa T, Liu H, Kamitani S, Tadauchi O, Cai W, Li H. 2019. Phylogeography of the assassin bug Sphedanolestes impressicollisin East Asia inferred from mitochondrial and nuclear gene sequences.International Journal of Molecular Sciences 20:1234 DOI: 10.3390/ijms20051234.
Dufresnes C, Litvinchuk SN, Borzée A, Jang Y, Li J-T, Miura I, Perrin N, Stöck M. 2016. Phylogeography reveals an ancient cryptic radiation in East-Asian tree frogs (Hyla japonica group) and complex relationships between continental and island lineages. BMC Evolutionary Biology 16:253 DOI: 10.1186/s12862-016-0814-x.
Excoffier L, Lischer HE. 2010. Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Molecular Ecology Resources 10:564-567 DOI: 10.1111/j.1755-0998.2010.02847.x.
Fong JJ, Li PP, Yang BT, Zhou ZY, Leache AD, Min MS, Waldman B. 2016. Influence of geology and human activity on the genetic structure and demography of the Oriental fire-bellied toad (Bombina orientalis ). Molecular Phylogenetics and Evolution 97:69-75 DOI: 10.1016/j.ympev.2015.12.019.
Fong JJ, Yang BT, Li PP, Waldman B, Min MS. 2020. Phylogenetic systematics of the water toad (Bufo stejnegeri ) elucidates the evolution of semi-aquatic toad ecology and Pleistocene glacial refugia.Frontiers in Ecology and Evolution 7:523 DOI: 10.3389/fevo.2019.00523.
Frost DR. 2020. Amphibian Species of the World: an Online Reference. Version 6.1. New York: American Museum of Natural History.Available at https://amphibiansoftheworld.amnh.org/index.php(accessed 20 March 2020)
Fu J, Weadick CJ, Zeng X, Wang Y, Liu Z, Zheng Y, Li C, Hu Y. 2005. Phylogeographic analysis of the Bufo gargarizans species complex: a revisit. Molecular Phylogenetics and Evolution 37:202-213 DOI: 10.1016/j.ympev.2005.03.023.
Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, Thompson JD, Gibson TJ, Higgins DG. 2007. Clustal W and Clustal X version 2.0.Bioinformatics 23:2947-2948 DOI: 10.1093/bioinformatics/btm404.
Guindon S, Gascuel O. 2003. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Systematic Biology 52:696-704 DOI: 10.1080/10635150390235520.
He L, Mukai T, Chu KH, Ma Q, Zhang J. 2015. Biogeographical role of the Kuroshio Current in the amphibious mudskipper Periophthalmus modestus indicated by mitochondrial DNA data. Scientific Reports5:1-12 DOI: 10.1038/srep15645.
Hu QX, Jiang YM, Tian WS. 1984. Taxonomic studies on the genusBufo of China. Acta Herpetologica Sinica 3:79-85.
Hu YL, Wu XB, Jiang ZG, Yan P, Su X, Cao SY. 2007. Population genetics and phylogeography of Bufo gargarizans in China.Biochemical Genetics 45:697-711 DOI: 10.1007/s10528-007-9107-9.
Huang MH, Jin YL, Cai CM. 1990. Fauna of Zhejiang: Amphibia, Reptilia . Hangzhou: Zhejiang Science and Technology Publishing House Press.
IUCN. 2019. IUCN SSC amphibian specialist group 2019. Available at http://www.iucn-amphibians.org (accessed December 2019)
Joly S, Bruneau A. 2006. Incorporating allelic variation for reconstructing the evolutionary history of organisms from multiple genes: an example from Rosa in North America. Systematic Biology55:623-636 DOI: 10.1080/10635150600863109.
Kim SI, Park SK, Lee H, Oshida T, Kimura J, Kim YJ, Nguyen ST, Sashika M, Min MS. 2013. Phylogeography of Korean raccoon dogs: implications of peripheral isolation of a forest mammal in East Asia. Journal of Zoology 290:225-235 DOI: 10.1111/jzo.12031.
Koh HS, Kartavtseva IV, Lee BK, Kweon GH, Yang BG, Heo SW, In ST. 2013. A preliminary study on genetic divergence of the Asian lesser white-toothed shrew Crocidura shantungensis (Mammalia: Soricomorpha) in mainland Korea, adjacent islands and continental East Asia: cytochrome b sequence analysis. Russian Journal of Theriology 12:71-77 DOI: 10.15298/rusjtheriol.12.2.02.
Kong WS. 2000. Vegetational history of the Korean Peninsula.Global Ecology and Biogeography 9:391-402 DOI: 10.1046/j.1365-2699.2000.00203.x.
Lee MY, Lissovsky AA, Park SK, Obolenskaya EV, Dokuchaev NE, Zhang YP, Yu L, Kim YJ, Voloshina I, Myslenkov A, Choi TY, Min MS, Lee H. 2008. Mitochondrial cytochrome b sequence variations and population structure of Siberian chipmunk (Tamias sibiricus ) in Northeastern Asia and population substructure in South Korea. Molecules and Cells 26:566-575.
Liang F, Changyuan Y, Jianping J. 2010. Progress and prospects for studies on Chinese amphibians. Asian Herpetological Research1:64-85 DOI: 10.3724/SP.J.1245.2010.00064.
Librado P, Rozas J. 2009. DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25:1451-1452 DOI: 10.1093/bioinformatics/btp187.
Liu K. 1988. Quaternary history of the temperate forests of China.Quaternary Science Reviews 7:1-20 DOI: 10.1016/0277-3791(88)90089-3.
Macey JR, Schulte II JA, Larson A, Fang Z, Wang Y, Tuniyev BS, Papenfuss TJ. 1998. Phylogenetic relationships of toads in the Bufo bufospecies group from the eastern escarpment of the Tibetan Plateau: a case of vicariance and dispersal. Molecular Phylogenetics and Evolution 9:80-87 DOI: 10.1006/mpev.1997.0440.
Meng Z, Garrett C, Shen Y, Liu L, Yang P, Huo Y, Zhao Q, Spelman A, Ng CS, Chang D. 2012. Prospective randomised evaluation of traditional Chinese medicine combined with chemotherapy: a randomised phase II study of wild toad extract plus gemcitabine in patients with advanced pancreatic adenocarcinomas. British Journal of Cancer 107:411-416 DOI: 10.1038/bjc.2012.283.
Miller MA, Pfeiffer W, Schwartz T. 2010. Creating the CIPRES Science Gateway for inference of large phylogenetic trees. 2010 Gateway Computing Environments Workshop (GCE) 1-8 DOI: 10.1109/GCE.2010.5676129.
Nei M. 1987. Molecular Evolutionary Genetics . New York: Columbia University Press.
Posada D. 2008. jModelTest: phylogenetic model averaging.Molecular Biology and Evolution 25:1253-1256 DOI: 10.1093/molbev/msn083.
Rambaut A. 2012. FigTree v1.4.0. A graphical viewer of phylogenetic trees. Available at http://tree.bio.ed.ac.uk/software/figtree/(accessed November 2013)
Rambaut A, Drummond AJ, Xie D, Baele G, Suchard MA. 2018. Posterior summarization in Bayesian phylogenetics using Tracer 1.7.Systematic Biology 67:901-904 DOI: 10.1093/sysbio/syy032.
Recuero E, Canestrelli D, Voros J, Szabo K, Poyarkov NA, Arntzen JW, Crnobrnja-Isailovic J, Kidov AA, Cogalniceanu D, Caputo FP, Nascetti G, Martinez-Solano I. 2012. Multilocus species tree analyses resolve the radiation of the widespread Bufo bufo species group (Anura, Bufonidae). Molecular Phylogenetics and Evolution 62:71-86 DOI: 10.1016/j.ympev.2011.09.008.
Ronquist F, Teslenko M, van der Mark P, Ayres DL, Darling A, Höhna S, Larget B, Liu L, Suchard MA, Huelsenbeck JP. 2012. MrBayes 3.2: Efficient Bayesian phylogenetic inference and model choice across a large model space. Systematic Biology 61:539–542 DOI: 10.1093/sysbio/sys029.
Sakka H, Quere JP, Kartavtseva I, Pavlenko M, Chelomina G, Atopkin D, Michaux J. 2010. Comparative phylogeography of four Apodemusspecies (Mammalia: Rodentia) in the Asian Far East: evidence of Quaternary climatic changes in their genetic structure. Biological Journal of the Linnean Society 100:797-821 DOI: 10.1111/j.1095-8312.2010.01477.x.
Stamatakis A. 2014. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics30:1312-1313 DOI: 10.1093/bioinformatics/btu033.
Stebich M, Mingram J, Han J, Liu J. 2009. Late Pleistocene spread of (cool-) temperate forests in Northeast China and climate changes synchronous with the North Atlantic region. Global and Planetary Change 65:56-70 DOI: 10.1016/j.gloplacha.2008.10.010.
Su Y, Nu X. 2001. 2001. Evaluation of pharmacodynamic effect of pharmaceutical agents of Chan Su. Journal of Traditional Chinese Medical Sciences 24:51-54.
Tamura K, Dudley J, Nei M, Kumar S. 2007. MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Molecular Biology and Evolution 24:1596-1599 DOI: 10.1093/molbev/msm092.
Teacher A, Griffiths D. 2011. HapStar: automated haplotype network layout and visualization. Molecular Ecology Resources11(1):151-153 DOI: 10.1111/j.1755-0998.2010.02890.x.
Tong H, Wo Y. 2017. Phylogenetic, Demographic and dating analyses ofBufo gargarizans populations from the Zhoushan Archipelago and Mainland China. Asian Herpetological Research 8:165-173 DOI: 10.16373/j.cnki.ahr.160069.
Yang BT, Zhou Y, Min MS, Matsui M, Dong BJ, Li PP, Fong JJ. 2017. Diversity and phylogeography of Northeast Asian brown frogs allied toRana dybowskii (Anura, Ranidae). Molecular Phylogenetics and Evolution 112:148-157 DOI: 10.1016/j.ympev.2017.04.026.
Yang SY, Suh JH, Min MS, Kang YJ, Kim JB. 2000. Genetic variation and divergency in two Korean Bufo species, Bufo gargarizansand B. stejnegeri (Anura, Bufonidae). Korean Journal of Genetics 22:209-221.
Yi S, Kim SJ. 2010. Vegetation changes in western central region of Korean Peninsula during the last glacial (ca. 21.1–26.1 cal kyr BP).Geosciences Journal 14:1-10 DOI: 10.1007/s12303-010-0001-9.
Yoshikawa N, Matsui M, Nishikawa K, Kim JB, Kryukov A. 2008. Phylogenetic relationships and biogeography of the Japanese clawed salamander, Onychodactylus japonicus (Amphibia: Caudata: Hynobiidae), and its congener inferred from the mitochondrial cytochromeb gene. Molecular Phylogenetics and Evolution 49:249-259 DOI: 10.1016/j.ympev.2008.07.016.
Yu TL, Lin HD, Weng CF. 2014. A new phylogeographic pattern of endemicBufo bankorensis in Taiwan Island is attributed to the genetic variation of populations. PLOS ONE 9:e98029 DOI: 10.1371/journal.pone.0098029.
Zhan A, Fu J. 2011. Past and present: Phylogeography of the Bufo gargarizans species complex inferred from multi-loci allele sequence and frequency data. Molecular Phylogenetics and Evolution61:136-148 DOI: 10.1016/j.ympev.2011.06.009.
Zhang D, Ye Z, Yamada K, Zhen Y, Zheng C, Bu W. 2016. Pleistocene sea level fluctuation and host plant habitat requirement influenced the historical phylogeography of the invasive species Amphiareus obscuriceps (Hemiptera: Anthocoridae) in its native range. BMC Evolutionary Biology 16:174 DOI: 10.1186/s12862-016-0748-3.
Zhang H, Yan J, Zhang G, Zhou K. 2008. Phylogeography and demographic history of Chinese black-spotted frog populations (Pelophylax nigromaculata ): evidence for independent refugia expansion and secondary contact. BMC Evolutionary Biology 8:21 DOI: 10.1186/1471-2148-8-21.
Zhang R, Song G, Qu Y, Alstrom P, Ramos R, Xing X, Ericson PG, Fjeldsa J, Wang H, Yang X, Kristin A, Shestopalov AM, Choe JC, Lei F. 2012. Comparative phylogeography of two widespread magpies: importance of habitat preference and breeding behavior on genetic structure in China.Molecular Phylogenetics and Evolution 65:562-572 DOI: 10.1016/j.ympev.2012.07.011.