References
Akkaya, Ö., 2020. Nicotiana tabacum-associated bioengineeredPseudomonas putida can enhance rhizoremediation of soil containing 2,4-dinitrotoluene. 3 Biotech. 10, 1-11.
Alexandrova, K.S., Denchev, P.D., Conger, B. V., 1996. Micropropagation of switchgrass by node culture. Crop Sci. 36, 1709-1711.
Brentner, L.B., Mukherji, S.T., Walsh, S.A., Schnoor, J.L., 2010. Localization of hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) and 2,4,6-trinitrotoluene (TNT) in poplar and switchgrass plants using phosphor imager autoradiography. Environ. Pollut. 158, 470-475.
Bryant, C., DeLuca, M., 1991. Purification and characterization of an oxygen-insensitive NAD(P)H nitroreductase from Enterobacter cloacae . J. Biol. Chem. 266, 4119-4125.
Bryant, C., Hubbard, L., McElroy, W.D., 1991. Cloning, nucleotide sequence, and expression of the nitroreductase gene fromEnterobacter cloacae . J. Biol. Chem. 266, 26-33.
Chauviac, F.X., Bommer, M., Yan, J., Parkin, G., Daviter, T., Lowden, P., Raven, E.L., Thalassinos, K., Keep, N.H., 2012. Crystal structure of reduced MsAcg, a putative nitroreductase from Mycobacterium smegmatis and a close homologue of Mycobacterium tuberculosisAcg. J. Biol. Chem. 287, 44372-44383.
Doty, S.L., 2008. Enhancing phytoremediation through the use of transgenics and endophytes. New Phytol. 179, 318-333.
Gandia-Herrero, F., Lorenz, A., Larson, T., Graham, I.A., Bowles, D.J., Rylott, E.L., Bruce, N.C., 2008. Detoxification of the explosive 2,4,6-trinitrotoluene in Arabidopsis: discovery of bifunctionalO - and C -glucosyltransferases. Plant J. 56, 963-974.
Gilbert, E.E., 1977. Recovery of organic values from TNT purification waste water. Propell. Explos. Pyrot. 2, 118-125.
Gong, P., Kuperman, R.G., Sunahara, G.I., 2003. Genotoxicity of 2,4- and 2,6-dinitrotoluene as measured by the Tradescantia micronucleus(Trad-MCN) bioassay. Mutat. Res-Gen. Tox. En. 538, 13-18.
Gunning, V., Tzafestas, K., Sparrow, H., Johnston, E.J., Brentnall, A.S., Potts, J.R., Rylott, E.L., Bruce, N.C., 2014. Arabidopsis glutathione transferases U24 and U25 exhibit a range of detoxification activities with the environmental pollutant and explosive 2,4,6-Trinitrotoluene. Plant Physiol. 165, 854-865.
Hannink, N., Rosser, S.J., French, C.E., Basran, A., Murray, J.A.H., Nicklin, S., Bruce, N.C., 2001. Phytodetoxification of TNT by transgenic plants expressing a bacterial nitroreductase. Nat. Biotechnol. 19, 1168-1172.
Hardin, C.F., Fu, C., Hisano, H., Xiao, X., Shen, H., Stewart, C.N., Parrott, W., Dixon, R.A., Wang, Z.Y., 2013. Standardization of switchgrass sample collection for cell wall and biomass trait analysis. Bioenergy. Res. 6, 755-762.
Johnson, G.R., Jain, R.K., Spain, J.C., 2002. Origins of the 2,4-dinitrotoluene pathway. J. Bacteriol. 184, 4219-4232.
Johnston, E.J., Rylott, E.L., Beynon, E., Lorenz, A., Chechik, V., Bruce, N.C., 2015. Monodehydroascorbate reductase mediates TNT toxicity in plants. Science. 349, 1072-1075.
Kim, H.Y., Song, H.G., 2005. Purification and characterization of NAD(P)H-dependent nitroreductase I from Klebsiella sp. C1 and enzymatic transformation of 2,4,6-trinitrotoluene. Appl. Microbiol. Biotechnol. 68, 766-773.
Kist, C.P., Scherer, C.E., Soares, M., Rodrigues, M.B., 2020. Biodegradation of nitroaromatic compounds in red water by white rot fungi pleurotus ostreatus and floridae. Rev. Ambient. Agua. 15, e2594.
Koder, R.L., Miller, A.F., 1998. Steady-state kinetic mechanism, stereospecificity, substrate and inhibitor specificity ofEnterobacter cloacae nitroreductase. Biochim. Biophys. Acta-Protein Struct. Mol. Enzymol. 1387, 395-405.
Lent, E.M., Crouse, L.C.B., Quinn, M.J., Wallace, S.M., 2012. Assessment of the in vivo genotoxicity of isomers of dinitrotoluene using the alkaline Comet and peripheral blood micronucleus assays. Mutat. Res-Gen. Tox. En. 742, 54-60.
Mann, D.G.J., King, Z.R., Liu, W., Joyce, B.L., Percifield, R.J., Hawkins, J.S., LaFayette, P.R., Artelt, B.J., Burris, J.N., Mazarei, M., Bennetzen, J.L., Parrott, W.A., Stewart, C.N., 2011. Switchgrass (Panicum virgatum L.) polyubiquitin gene (PvUbi1 and PvUbi2) promoters for use in plant transformation. BMC Biotechnol. 11.
Mann, D.G.J., LaFayette, P.R., Abercrombie, L.L., King, Z.R., Mazarei, M., Halter, M.C., Poovaiah, C.R., Baxter, H., Shen, H., Dixon, R.A., Parrott, W.A., Stewart, C.N., 2012. Gateway-compatible vectors for high-throughput gene functional analysis in switchgrass (Panicum virgatum L.) and other monocot species. Plant Biotechnol. J. 10, 226-236.
Rai, P.K., Kim, K.H., Lee, S.S., Lee, J.H., 2020. Molecular mechanisms in phytoremediation of environmental contaminants and prospects of engineered transgenic plants/microbes. Sci. Total Environ. 705.
Rao, M.R., Halfhill, M.D., Abercrombie, L.G., Ranjan, P., Abercrombie, J.M., Gouffon, J.S., Saxton, A.M., Stewart, C.N., 2009. Phytoremediation and phytosensing of chemical contaminants, RDX and TNT: identification of the required target genes. Funct. Integr. Genomics. 9, 537-547.
Rich, M.H., Sharrock, A. V, Hall, K.R., Ackerley, D.F., MacKichan, J.K., 2018. Evaluation of NfsA-like nitroreductases from Neisseria meningitidis and Bartonella henselae for enzyme-prodrug therapy, targeted cellular ablation, and dinitrotoluene bioremediation. Biotechnol. Lett. 40, 359-367.
Rickert, D.E., Butterworth, B.E., Popp, J.A., Krahn, D.F., 1984. Dinitrotoluene: Acute toxicity, oncogenicity, genotoxicity, and metabolism. Crit. Rev. Toxicol. 13, 217-234.
Roldán, M.D., Pérez-Reinado, E., Castillo, F., Moreno-Vivián, C., 2008. Reduction of polynitroaromatic compounds: The bacterial nitroreductases. FEMS Microbiol. 32, 474-500.
Song, G., Yuan, S.X., Wen, X.H., Xie, Z.I., Lou, L.Q., Hu, B.Y., Cai, Q.S., Xu, B., 2018. Transcriptome analysis of Cd-treated switchgrass root revealed novel transcripts and the importance of HSF/HSP network in switchgrass Cd tolerance. Plant Cell Rep. 37, 1485-1497.
Tognetti, V.B., Monti, M.R., Valle, E.M., Carrillo, N., Smania, A.M., 2007. Detoxification of 2,4-dinitrotoluene by transgenic tobacco plants expressing a bacterial flavodoxin. Environ. Sci. Technol. 41, 4071-4076.
Tsai, T.S., 1991. Biotreatment of red water - a hazardous-waste stream from explosive manufacture - with fungal systems. Hazard. Waste Hazard. Mater. 8, 231-244.
Van Dillewijn, P., Couselo, J.L., Corredoira, E., Delgado, A., Wittich, R.M., Ballester, A., Ramos, J.L., 2008. Bioremediation of 2,4,6-trinitrotoluene by bacterial nitroreductase expressing transgenic aspen. Env. Sci Technol. 42, 7405-7410.
Williams, E.M., Sharrock, A. V, Rylott, E.L., Bruce, N.C., MacKichan, J.K., Ackerley, D.F., 2019. A cofactor consumption screen identifies promising NfsB family nitroreductases for dinitrotoluene remediation. Biotechnol. Lett. 41, 1155-1162.
Wise, A.A., Liu, Z., Binns, A.N., 2006. Three methods for the introduction of foreign DNA into Agrobacterium . Methods Mol. Biol. 343, 43-53.
Wu, Z.Y., Cao, Y.P., Yang, R.J., Qi, T.X., Hang, Y.Q., Lin, H., Zhou, G.K., Wang, Z.Y., Fu, C.X., 2016. Switchgrass SBP-boxtranscription factors PvSPL1 and 2 function redundantly to initiate side tillers and affect biomass yield of energy crop. Biotechnol. Biofuels. 9, 101.
Xiong, W.D., Wu, Z.Y., Liu, Y.C., Li, Y., Su, K.L., Bai, Z.T., Guo, S.Y., Hu, Z.B., Zhang, Z.M., Bao, Y., Sun, J., Yang, G.F., Fu, C.X., 2019. Mutation of 4-coumarate: coenzyme A ligase 1 gene affects lignin biosynthesis and increases the cell wall digestibility in maizebrown midrib5 mutants. Biotechnol. Biofuels. 12.
Xu, W.J., Zhao, Q.L., Li, Z.L., Lu, X.Y., Han, S.Q., Ye, Z.F., 2019. Biodegradation of dinitrotoluene sulfonates and other nitro-aromatic compounds by Pseudomonas sp . X5 isolated from TNT red water contaminated soil. J. Clean. Prod. 214, 782-790.
Zajc, B., 1999. Synthesis of (±)-trans-7,8-dihydrodiol of 6-fluoro-benzo[a]pyrene via hydroxyl-directed regioselective functionalization of substituted pyrene. J. Org. Chem. 64, 1902-1907.
Zhang, L., Routsong, R., Nguyen, Q., Rylott, E.L., Bruce, N.C., Strand, S.E., 2017a. Expression in grasses of multiple transgenes for degradation of munitions compounds on live-fire training ranges. Plant Biotechnol. J. 15, 624-633.
Zhang, L., Rylott, E.L., Bruce, N.C., Strand, S.E., 2019. Genetic modification of western wheatgrass (Pascopyrum smithii ) for the phytoremediation of RDX and TNT. Planta. 249, 1007-1015.
Zhang, L., Rylott, E.L., Bruce, N.C., Strand, S.E., 2017b. Phytodetoxification of TNT by transplastomic tobacco (Nicotiana tabacum ) expressing a bacterial nitroreductase. Plant Mol. Biol. 95, 99-109.
Ziganshin, A.M., Naumov, A. V., Suvorova, E.S., Naumenko, E.A., Naumova, R.P., 2007. Hydride-mediated reduction of 2,4,6-trinitrotoluene by yeasts as the way to its deep degradation. Microbiology. 76, 676-682.