- align RNA-seq reads to the genome sequence
- gene density data file from gff gene annotations (Evan)
Repeats
RepeatMasker (updated database) and One Code -- Corrinne
Family | Fragments | Copies | Total_Mb |
DNA | 11,387 | 6,918 | 11.8 |
DNA/EnSpmCACTA | 1,865 | 1,134 | 3.5 |
DNA/Harbinger | 1 | 1 | 0.0 |
DNA/hAT | 1,014 | 631 | 0.6 |
DNA/hAT-Tip100 | 16 | 8 | 0.0 |
DNA/L1 | 926 | 439 | 1.1 |
DNA/MarinerTc1 | 58 | 34 | 0.0 |
DNA/MuDR | 7,505 | 4,670 | 6.6 |
DNA/PIF-Harbinger | 2 | 1 | 0.0 |
LTR | 811,540 | 448,388 | 606.6 |
LTR/Copia | 40,599 | 24,860 | 38.4 |
LTR/Gypsy | 770,783 | 423,372 | 568.2 |
EVERYTHING_TE | 822,848 | 455,228 | 618.4 |