Figure X. Genomic assembly data of the new G. raimondii sequence suggest that the previously report mitochondria insertion may have been due to an assembly error. A) Genome alignments between G. raimondii (Paterson 2012) and our new genome sequence of D5_07 (previously Chr. 01). The red circle indicates the putative position of the mitochondria genome insertion in the G. raimondii sequence (Paterson 2012) relative to the new assembly. B) Alignment of D5 PacBio reads (Track 2) to the new reference genome of G. raimondii (Track 1). The multi-colored bars represent individual PacBio reads (Track 2). The previous reference genome of D5 had a mitochondria insertion somewhere in this 14kb region indicated by the blue bar of Track 3. There are no PacBio reads that span the gap between the flanking regions of the 6,071 repeat and the repeat itself. C) Bionano data mapped to the previous reference genome sequence of D5 (Paterson et al. 2012) also suggest an insertion of a sequence that is non-contiguous in the flanking regions.