NCBI BioProjectID |
PRJNA516983 |
PRJNA556086 |
DNAseq: |
|
|
Sample ID genome |
MP_SCH12 |
GOP001 |
BioSample DNAseq |
SAMN10817714 |
SAMN12340637 |
Illumina DNAseq data |
237.1 Gb |
264.5 Gb |
NCBI-SRA accession DNAseq |
SRX7207073 |
SRX6595905 |
Nanopore 1D data |
7.6 Gb |
3.1 Gb |
NCBI-SRA accession Nanopore |
SRX7207074 |
SRX6595904 |
Genome assembly: |
|
|
Assembled genome size |
675.98 Mb |
661.43 Mb |
Scaffold N50 |
845 Kb |
252 Kb |
Number of scaffolds |
2,962 scaffolds |
7,165 scaffolds |
Contig N50
|
679 Kb |
244 Kb |
Number of contigs |
3,369 contigs |
7,352 contigs |
GenBank assembly accession |
GCA_005408345.1 |
GCA_008360985.1 |
WGS Project accession |
SEMN01 |
VMKM01 |
Whole Genome Shotgun accession |
SEMN00000000.1 |
VMKM00000000.1 |
BUSCO3 genome completeness |
96.9% |
95.9% |
Genome repetitiveness |
27.7% |
25.8% |
RNAseq: |
|
|
Sample ID RNAseq |
MP_527 |
GPTT01 |
BioSample RNAseq |
SAMN13380527 |
SAMN14943551 |
Illumina RNAseq, G bases |
15.1 Gb |
11.6 Gb |
NCBI-SRA accession RNAseq |
SRX7207075 |
SRX8356284 |
Genome annotation: |
|
|
Number of predicted protein-coding genes |
33,422 |
36,108 |
Number of functionally annotated protein-coding genes |
29,940 |
31,895 |
Number of genes with GO annotations |
16,264 |
16,792 |
Zenodo DOI for annotations by RepeatModeler2, BRAKER2 and InterProScan5 |
10.5281/zenodo.4315338 |
10.5281/zenodo.4315338 |
DArTseq: |
|
|
Bridges DOI for genotypes and covariate files |
10.26180/5ea1736cc3553 |
10.26180/13551713 |
Whole Genome Resequencing: |
|
|
NCBI BioProjectID |
PRJNA598965 |
NA |