References
Asif, M. H., Lakhwani, D., Pathak, S., Gupta, P., Bag, S. K., Nath, P., & Trivedi, P. K. (2014). Transcriptome analysis of ripe and unripe fruit tissue of banana identifies major metabolic networks involved in fruit ripening process. BMC Plant Biol, 14 , 316. doi:10.1186/s12870-014-0316-1
Aung, K., Lin, S. I., Wu, C. C., Huang, Y. T., Su, C. L., & Chiou, T. J. (2006). pho2, a phosphate overaccumulator, is caused by a nonsense mutation in a microRNA399 target gene. Plant Physiol, 141 (3), 1000-1011. doi:10.1104/pp.106.078063
Babben, S., Schliephake, E., Janitza, P., Berner, T., Keilwagen, J., Koch, M., . . . Perovic, D. (2018). Association genetics studies on frost tolerance in wheat (Triticum aestivum L.) reveal new highly conserved amino acid substitutions in CBF-A3, CBF-A15, VRN3 and PPD1 genes. Bmc Genomics, 19 , 24. doi:10.1186/s12864-018-4795-6
Baek, D., Chun, H. J., Kang, S., Shin, G., Park, S. J., Hong, H., . . . Yun, D. J. (2016). A Role for Arabidopsis miR399f in Salt, Drought, and ABA Signaling. Mol Cells, 39 (2), 111-118. doi:10.14348/molcells.2016.2188
Bari, R., Datt Pant, B., Stitt, M., & Scheible, W. R. (2006). PHO2, microRNA399, and PHR1 define a phosphate-signaling pathway in plants.Plant Physiol, 141 (3), 988-999. doi:10.1104/pp.106.079707
Berrocal-Lobo, M., Ibañez, C., Acebo, P., Ramos, A., Perez-Solis, E., Collada, C., . . . Allona, I. (2011). Identification of a homolog of Arabidopsis DSP4 (SEX4) in chestnut: its induction and accumulation in stem amyloplasts during winter or in response to the cold. Plant Cell Environ, 34 (10), 1693-1704. doi:10.1111/j.1365-3040.2011.02365.x
Breuil, C., & Saddler, J. (1985). Comparison of the 3, 5-dinitrosalicylic acid and Nelson-Somogyi methods of assaying for reducing sugars and determining cellulase activity. Enzyme and microbial technology, 7 (7), 327-332.
Chinnusamy, V., Ohta, M., Kanrar, S., Lee, B. H., Hong, X., Agarwal, M., & Zhu, J. K. (2003a). ICE1: a regulator of cold-induced transcriptome and freezing tolerance in Arabidopsis. Genes Dev, 17 (8), 1043-1054. doi:10.1101/gad.1077503
Chinnusamy, V., Ohta, M., Kanrar, S., Lee, B. H., Hong, X. H., Agarwal, M., & Zhu, J. K. (2003b). ICE1: a regulator of cold-induced transcriptome and freezing tolerance in Arabidopsis. Genes & Development, 17 (8), 1043-1054. doi:10.1101/gad.1077503
Chiou, T. J., Aung, K., Lin, S. I., Wu, C. C., Chiang, S. F., & Su, C. L. (2006). Regulation of phosphate homeostasis by microRNA in Arabidopsis. Plant Cell, 18 (2), 412-421. doi:10.1105/tpc.105.038943
Chiou, T. J., & Lin, S. I. (2011). Signaling network in sensing phosphate availability in plants. Annu Rev Plant Biol, 62 , 185-206. doi:10.1146/annurev-arplant-042110-103849
Ciereszko, I., Johansson, H., & Kleczkowski, L. A. (2005). Interactive effects of phosphate deficiency, sucrose and light/dark conditions on gene expression of UDP-glucose pyrophosphory lase in Arabidopsis.Journal of Plant Physiology, 162 (3), 343-353. doi:10.1016/j.jplph.2004.08.003
Clough, S. J., & Bent, A. F. (1998). Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana.The Plant journal : for cell and molecular biology, 16 (6), 735-743. doi:10.1046/j.1365-313x.1998.00343.x
Deng, C., Ye, H., Fan, M., Pu, T., & Yan, J. (2017). The rice transcription factors OsICE confer enhanced cold tolerance in transgenic Arabidopsis. Plant Signal Behav, 12 (5), e1316442. doi:10.1080/15592324.2017.1316442
Dianjun, X., Yu, Z., & Kuide, Y. I. N. (2007). Transformation of ICE1 Gene Mediated by Agrobacterium Improves Cold Tolerance in Transgenie Rice. [农杆菌介导的转ice1基因提高水稻的耐寒性]. Chinese Journal of Rice Science, 21 (5), 482-486.
Ding, Y., Lv, J., Shi, Y., Gao, J., Hua, J., Song, C., . . . Yang, S. (2019). EGR2 phosphatase regulates OST1 kinase activity and freezing tolerance in Arabidopsis. Embo j, 38 (1). doi:10.15252/embj.201899819
Ding, Y., Shi, Y., & Yang, S. (2019). Advances and challenges in uncovering cold tolerance regulatory mechanisms in plants. New Phytologist .
Ding, Y. L., Li, H., Zhang, X. Y., Xie, Q., Gong, Z. Z., & Yang, S. H. (2015). OST1 Kinase Modulates Freezing Tolerance by Enhancing ICE1 Stability in Arabidopsis. Developmental Cell, 32 (3), 278-289. doi:10.1016/j.devcel.2014.12.023
Dionisio-Sese, M. L., & Tobita, S. (1998). Antioxidant responses of rice seedlings to salinity stress. Plant Science, 135 (1), 1-9. doi:10.1016/s0168-9452(98)00025-9
Dowgert, M. F., & Steponkus, P. L. (1984). Behavior of the Plasma Membrane of Isolated Protoplasts during a Freeze-Thaw Cycle. Plant Physiology .
Du, Q. G., Wang, K., Zou, C., Xu, C., & Li, W. X. (2018). The PILNCR1-miR399 Regulatory Module Is Important for Low Phosphate Tolerance in Maize. Plant Physiology, 177 (4), 1743-1753. doi:10.1104/pp.18.00034
Feng, H.-L., Ma, N.-N., Meng, X., Zhang, S., Wang, J.-R., Chai, S., & Meng, Q.-W. (2013). A novel tomato MYC-type ICE1-like transcription factor, SlICE1a, confers cold, osmotic and salt tolerance in transgenic tobacco. Plant Physiology and Biochemistry, 73 , 309-320. doi:10.1016/j.plaphy.2013.09.014
Fujii, H., Chiou, T. J., Lin, S. I., Aung, K., & Zhu, J. K. (2005). A miRNA involved in phosphate-starvation response in Arabidopsis.Curr Biol, 15 (22), 2038-2043. doi:10.1016/j.cub.2005.10.016
Gao, N., Qiang, X. M., Zhai, B. N., Min, J., & Shi, W. M. (2015). Transgenic tomato overexpressing ath-miR399d improves growth under abiotic stress conditions. Russian Journal of Plant Physiology, 62 (3), 360-366. doi:10.1134/s1021443715030061
Gusta, & L., V. (2004). The effect of water, sugars, and proteins on the pattern of ice nucleation and propagation in acclimated and nonacclimated canola leaves. Plant Physiology, 135 (3), 1642-1653.
Hejazi, M., Fettke, J., Haebel, S., Edner, C., & Ritte, G. (2010). Glucan, water dikinase phosphorylates crystalline maltodextrins and thereby initiates solubilization. The Plant Journal, 55 (2), 323-334.
Hu, B., Zhu, C., Li, F., Tang, J., Wang, Y., Lin, A., . . . Chu, C. (2011). LEAF TIP NECROSIS1 plays a pivotal role in the regulation of multiple phosphate starvation responses in rice. Plant Physiol, 156 (3), 1101-1115. doi:10.1104/pp.110.170209
Hu, R., Li, Z., Xiang, S., Li, Y., Yi, P., Xiao, M., & Zhang, X. (2019). Comparative MicroRNA Profiling Reveals the Cold Response Mechanisms in two Contrasting Tobacco Cultivars. International Journal of Agriculture and Biology, 22 (4), 757-762. doi:10.17957/ijab/15.1126
Hu, R. S., Li, Z. M., Xiang, S. P., Li, Y. Y., Yi, P. F., Xiao, M. Q., & Zhang, X. W. (2019). Comparative MicroRNA Profiling Reveals the Cold Response Mechanisms in two Contrasting Tobacco Cultivars.International Journal of Agriculture and Biology, 22 (4), 757-762. doi:10.17957/ijab/15.1126
Huang, T. K., Han, C. L., Lin, S. I., Chen, Y. J., Tsai, Y. C., Chen, Y. R., . . . Chiou, T. J. (2013). Identification of downstream components of ubiquitin-conjugating enzyme PHOSPHATE2 by quantitative membrane proteomics in Arabidopsis roots. Plant Cell, 25 (10), 4044-4060. doi:10.1105/tpc.113.115998
Hurry, V., Strand, A., Furbank, R., & Stitt, M. (2000). The role of inorganic phosphate in the development of freezing tolerance and the acclimatization of photosynthesis to low temperature is revealed by the pho mutants of Arabidopsis thaliana. The Plant journal : for cell and molecular biology, 24 (3), 383-396. doi:10.1046/j.1365-313x.2000.00888.x
Jan, N., Mahboob ul, H., & Andrabi, K. I. (2009). Cold resistance in plants: A mystery unresolved. Electronic Journal of Biotechnology, 12 (3), 15. doi:10.2225/vol12-issue3-fulltext-3
Juan, J. X., Yu, X. H., Jiang, X. M., Gao, Z., Zhang, Y., Li, W., . . . Yang, G. (2015). Agrobacterium-mediated transformation of tomato with the ICE1 transcription factor gene. Genetics and Molecular Research, 14 (1), 597-608. doi:10.4238/2015.January.30.1
Kaplan, F., & Guy, C. L. (2005). RNA interference of Arabidopsis beta‐amylase8 prevents maltose accumulation upon cold shock and increases sensitivity of PSII photochemical efficiency to freezing stress. The Plant Journal, 44 .
Kaplan, F., Kopka, J., Sung, D. Y., Zhao, W., Popp, M., Porat, R., & Guy, C. L. (2007). Transcript and metabolite profiling during cold acclimation of Arabidopsis reveals an intricate relationship of cold‐regulated gene expression with modifications in metabolite content.The Plant Journal, 50 (6).
Kilian, J., Whitehead, D., Horak, J., Wanke, D., Weinl, S., Batistic, O., . . . Harter, K. (2007). The AtGenExpress global stress expression data set: protocols, evaluation and model data analysis of UV-B light, drought and cold stress responses. Plant Journal, 50 (2), 347-363. doi:10.1111/j.1365-313X.2007.03052.x
Kilian, J., Whitehead, D., Horak, J., Wanke, D., Weinl, S., Batistic, O., . . . Harter, K. (2007). The AtGenExpress global stress expression data set: protocols, evaluation and model data analysis of UV‐B light, drought and cold stress responses. The Plant Journal, 50 (2), 347-363.
Kim, W., Ahn, H. J., Chiou, T. J., & Ahn, J. H. (2011). The role of the miR399-PHO2 module in the regulation of flowering time in response to different ambient temperatures in Arabidopsis thaliana. Mol Cells, 32 (1), 83-88. doi:10.1007/s10059-011-1043-1
Koc, I., Filiz, E., & Tombuloglu, H. (2015). Assessment of miRNA expression profile and differential expression pattern of target genes in cold-tolerant and cold-sensitive tomato cultivars.Biotechnology & Biotechnological Equipment, 29 (5), 851-860.
Li, Z., Fu, L., Wang, X., Sun, Y., & Tong, M. (2010). Advance on winter wheat breeding for freezing tolerance in frigid region. [高寒地区冬小麦抗寒育种研究进展]. Journal of Northeast Agricultural University, 41 (8), 141-147.
Liang, C., Wang, J., Zhao, J., Tian, J., & Liao, H. (2014). Control of phosphate homeostasis through gene regulation in crops. Curr Opin Plant Biol, 21 , 59-66. doi:10.1016/j.pbi.2014.06.009
Ling, H. Q., Ma, B., Shi, X., Liu, H., Dong, L., Sun, H., . . . Liang, C. (2018). Genome sequence of the progenitor of wheat A subgenome Triticum urartu. Nature, 557 (7705), 424-428. doi:10.1038/s41586-018-0108-0
Liu, J. J., Wei, Z., & Li, J. H. (2014). Effects of copper on leaf membrane structure and root activity of maize seedling. Bot Stud, 55 (1), 47. doi:10.1186/s40529-014-0047-5
Liu, Q., Kasuga, M., Sakuma, Y., Abe, H., Miura, S., Yamaguchi-Shinozaki, K., & Shinozaki, K. (1998). Two transcription factors, DREB1 and DREB2, with an EREBP/AP2 DNA binding domain separate two cellular signal transduction pathways in drought- and low-temperature-responsive gene expression, respectively, in Arabidopsis. Plant Cell, 10 (8), 1391-1406. doi:10.1105/tpc.10.8.1391
Lu, Q., Guo, F., Xu, Q., & Cang, J. (2020). LncRNA improves cold resistance of winter wheat by interacting with miR398. Funct Plant Biol, 47 (6), 544-557. doi:10.1071/fp19267
Lu, Q., Xu, Q., Guo, F., Lv, Y., Song, C., Feng, M., . . . Cang, J. (2020). Identification and characterization of long non-coding RNAs as competing endogenous RNAs in the cold stress response of Triticum aestivum. Plant Biology, 22 (4), 635-645. doi:10.1111/plb.13119
Lundmark, M., Cavaco, A. M., Trevanion, S., & Hurry, V. (2006). Carbon partitioning and export in transgenic Arabidopsis thaliana with altered capacity for sucrose synthesis grown at low temperature: a role for metabolite transporters. Plant, Cell & Environment, 29 (9).
Luo, P., Li, Z. Y., Chen, W., Xing, W., Yang, J., & Cui, Y. Y. (2020). Overexpression of RmICE1, a bHLH transcription factor from Rosa multiflora, enhances cold tolerance via modulating ROS levels and activating the expression of stress-responsive genes.Environmental and Experimental Botany, 178 , 11. doi:10.1016/j.envexpbot.2020.104160
Lv, Y., Song, C. H., Lu, Q. W., Tian, Y., Li, H. D., Zhang, D., . . . Cang, J. (2018). The Expression Characteristics of Transcription Factors Regulated by Exogenous ABA in Winter Wheat (Triticum aestivum) under Cold Stress. Russian Journal of Plant Physiology, 65 (6), 842-848. doi:10.1134/s1021443718060134
Miura, K., Jin, J. B., Lee, J., Yoo, C. Y., Stirm, V., Miura, T., . . . Hasegawa, P. M. (2007). SIZ1-mediated sumoylation of ICE1 controls CBF3/DREB1A expression and freezing tolerance in Arabidopsis.Plant Cell, 19 (4), 1403-1414. doi:10.1105/tpc.106.048397
Muller, R., Morant, M., Jarmer, H., Nilsson, L., & Nielsen, T. H. (2007). Genome-wide analysis of the Arabidopsis leaf transcriptome reveals interaction of phosphate and sugar metabolism. Plant Physiology, 143 (1), 156-171. doi:10.1104/pp.106.090167
Ning, J., Li, X., Hicks, L. M., & Xiong, L. (2010). A Raf-like MAPKKK gene DSM1 mediates drought resistance through reactive oxygen species scavenging in rice. Plant Physiol, 152 (2), 876-890. doi:10.1104/pp.109.149856
Nour-Eldin, H. H., Hansen, B. G., Nørholm, M. H., Jensen, J. K., & Halkier, B. A. (2006). Advancing uracil-excision based cloning towards an ideal technique for cloning PCR fragments. Nucleic Acids Research, 34 (18), e122-e122.
Novillo, F., Alonso, J. M., Ecker, J. R., & Salinas, J. (2004). CBF2/DREB1C is a negative regulator of CBF1/DREB1B and CBF3/DREB1A expression and plays a central role in stress tolerance in Arabidopsis.Proc Natl Acad Sci U S A, 101 (11), 3985-3990. doi:10.1073/pnas.0303029101
Pegler, J. L., Oultram, J. M. J., Grof, C. P. L., & Eamens, A. L. (2020). Molecular Manipulation of the miR399/PHO2 Expression Module Alters the Salt Stress Response of Arabidopsis thaliana. Plants (Basel), 10 (1). doi:10.3390/plants10010073
Peng, K. K., Tian, Y., Cang, J., Yu, J., Wang, D. J., He, F. X., . . . Tan, Y. G. (2021). Overexpression of TaFBA-A10 from Winter Wheat Enhances Freezing Tolerance in Arabidopsis thaliana. Journal of Plant Growth Regulation , 13. doi:10.1007/s00344-021-10304-7
Peng, T., Zhu, X., Duan, N., & Liu, J. H. (2014). PtrBAM1, a β-amylase-coding gene of Poncirus trifoliata, is a CBF regulon member with function in cold tolerance by modulating soluble sugar levels.Plant Cell Environ, 37 (12), 2754-2767. doi:10.1111/pce.12384
Rizwan, M., Ali, S., Ali, B., Adrees, M., Arshad, M., Hussain, A., . . . Waris, A. A. (2019). Zinc and iron oxide nanoparticles improved the plant growth and reduced the oxidative stress and cadmium concentration in wheat. Chemosphere, 214 , 269-277. doi:10.1016/j.chemosphere.2018.09.120
Ruelland, E., Vaultier, M. N., Zachowski, A., & Hurry, V. (2009). Cold signalling and cold acclimation in plants.
Shabala, S. N., Shabala, S. I., Martynenko, A. I., Babourina, O., & Newman, I. A. (1998). Salinity effect on bioelectric activity, growth, Na+ accumulation and chlorophyll fluorescence of maize leaves: a comparative survey and prospects for screening. Functional Plant Biology, 25 (5), 609-616. doi:10.1071/PP97146
Shi, Y., Ding, Y., & Yang, S. (2018). Molecular Regulation of CBF Signaling in Cold Acclimation. Trends in Plant Science, 23 (7), S1360138518300864.
Sofo, A., Dichio, B., Xiloyannis, C., & Masia, A. (2004). Lipoxygenase activity and proline accumulation in leaves and roots of olive trees in response to drought stress. Physiologia Plantarum, 121 (1), 58-65. doi:10.1111/j.0031-9317.2004.00294.x
Song, X., Li, Y., Cao, X., & Qi, Y. (2019). MicroRNAs and Their Regulatory Roles in Plant-Environment Interactions. Annu Rev Plant Biol, 70 , 489-525. doi:10.1146/annurev-arplant-050718-100334
Stockinger, E. J., Gilmour, S. J., & Thomashow, M. F. (1997). Arabidopsis thaliana CBF1 encodes an AP2 domain-containing transcriptional activator that binds to the C-repeat/DRE, a cis-acting DNA regulatory element that stimulates transcription in response to low temperature and water deficit. Proc Natl Acad Sci U S A, 94 (3), 1035-1040. doi:10.1073/pnas.94.3.1035
Tang, K., Zhao, L., Ren, Y., Yang, S., Zhu, J. K., & Zhao, C. (2020). The transcription factor ICE1 functions in cold stress response by binding to the promoters of CBF and COR genes. J Integr Plant Biol, 62 (3), 258-263. doi:10.1111/jipb.12918
Tian, Y., Peng, K., Bao, Y., Zhang, D., Meng, J., Wang, D., . . . Cang, J. (2021). Glucose-6-phosphate dehydrogenase and 6-phosphogluconate dehydrogenase genes of winter wheat enhance the cold tolerance of transgenic Arabidopsis. Plant Physiol Biochem, 161 , 86-97. doi:10.1016/j.plaphy.2021.02.005
Wang, J., Ma, X. M., Kojima, M., Sakakibara, H., & Hou, B. K. (2013). Glucosyltransferase UGT76C1 finely modulates cytokinin responses via cytokinin N-glucosylation in Arabidopsis thaliana. Plant Physiol Biochem, 65 , 9-16. doi:10.1016/j.plaphy.2013.01.012
Wang, J., Sun, J., Miao, J., Guo, J., Shi, Z., He, M., . . . Li, Z. (2013). A phosphate starvation response regulator Ta-PHR1 is involved in phosphate signalling and increases grain yield in wheat. Ann Bot, 111 (6), 1139-1153. doi:10.1093/aob/mct080
Wang, R., Fang, Y. N., Wu, X. M., Qing, M., Li, C. C., Xie, K. D., . . . Guo, W. W. (2020). The miR399-CsUBC24 Module Regulates Reproductive Development and Male Fertility in Citrus. Plant Physiol, 183 (4), 1681-1695. doi:10.1104/pp.20.00129
Wang, S. T., Sun, X. L., Hoshino, Y., Yu, Y., Jia, B., Sun, Z. W., . . . Zhu, Y. M. (2014). MicroRNA319 positively regulates cold tolerance by targeting OsPCF6 and OsTCP21 in rice (Oryza sativa L.). Plos One, 9 (3), e91357.
Wang, Y., Zhang, J., Cui, W., Guan, C., Mao, W., & Zhang, Z. (2017). Improvement in Fruit Quality by Overexpressing miR399a in Woodland Strawberry. J Agric Food Chem, 65 (34), 7361-7370. doi:10.1021/acs.jafc.7b01687
Wang, Z. Y., Ruan, W. Y., Shi, J., Zhang, L., Xiang, D., Yang, C., . . . Wu, P. (2014). Rice SPX1 and SPX2 inhibit phosphate starvation responses through interacting with PHR2 in a phosphate-dependent manner.Proc Natl Acad Sci U S A, 111 (41), 14953-14958. doi:10.1073/pnas.1404680111
Xu, L. X., Han, L. B., & Huang, B. R. (2011). Antioxidant Enzyme Activities and Gene Expression Patterns in Leaves of Kentucky Bluegrass in Response to Drought and Post-drought Recovery. Journal of the American Society for Horticultural Science, 136 (4), 247-255. doi:10.21273/jashs.136.4.247
Yamaguchi-Shinozaki, K., & Shinozaki, K. (1994). A novel cis-acting element in an Arabidopsis gene is involved in responsiveness to drought, low-temperature, or high-salt stress. Plant Cell, 6 (2), 251-264. doi:10.1105/tpc.6.2.251
Yano, & R. (2005). Starch-Related α-Glucan/Water Dikinase Is Involved in the Cold-Induced Development of Freezing Tolerance in Arabidopsis.Plant Physiology, 138 (2), 837-846.
Yano, R., Nakamura, M., Yoneyama, T., & Nishida, I. (2005). Starch-related alpha-glucan/water dikinase is involved in the cold-induced development of freezing tolerance in Arabidopsis.Plant Physiol, 138 (2), 837-846. doi:10.1104/pp.104.056374
Zhang, K., Song, Q., Wei, Q., Wang, C., Zhang, L., Xu, W., & Su, Z. (2016). Down-regulation of OsSPX1 caused semi-male sterility, resulting in reduction of grain yield in rice. Plant Biotechnol J, 14 (8), 1661-1672. doi:10.1111/pbi.12527
Zhang, Z., Li, J., Li, F., Liu, H., Yang, W., Chong, K., & Xu, Y. (2017). OsMAPK3 Phosphorylates OsbHLH002/OsICE1 and Inhibits Its Ubiquitination to Activate OsTPP1 and Enhances Rice Chilling Tolerance.Dev Cell, 43 (6), 731-743.e735. doi:10.1016/j.devcel.2017.11.016
Zhao, L. Y., Yang, T. Y., Xing, C. H., Dong, H. Z., Qi, K. J., Gao, J. Z., . . . Huang, X. S. (2019). The beta-amylase PbrBAM3 from pear (Pyrus betulaefolia) regulates soluble sugar accumulation and ROS homeostasis in response to cold stress. Plant Science, 287 , 13. doi:10.1016/j.plantsci.2019.110184