Additional files
Table S1. The statistics of sequencing reads on Illumina platform.
Table S2. The statistics of sequencing reads on Nanopore platform.
Table S3. The statistics of Hi-C sequencing reads.
Table S4. The statistics of the polished genome and chromosome-level
genome.
Table S5. Statistics of the assembled chromosome-level genome via 3D de
novo assembly software.
Table S6. Comparison of all the released testudines genomes with our
chromosome-level genome.
Table S7. The statistics of RNA sequencing reads on Illumina platform.
Table S8. The statistics of the assembled transcripts by Bridger of 5
organs/tissues.
Table S9. The statistics of the assembled transcripts mapping ratio on
genome.
Table S10. The quality evaluation of assembled genome by BUSCO software.
Table S11. The statistics of the short reads mapping ratio on the
assembled genome.
Table S12. The statistics of the annotated repeat sequences in our
assembled genome.
Table S13. The statistics of the annotated repeat sequences in our
assembled genome by de novo prediction.
Table S14. The functional annotation of the predicted protein-coding
genes.
Table S15. GO enrichment of the expanded gene families in salmonids
analyzed by CAFE.
Table S16. KEGG enrichment of the expanded gene families in salmonids
analyzed by CAFE.
Table S17. GO enrichment of the expanded gene families in B. l.
tsinlingensis genome analyzed by CAFE.
Table S18. KEGG enrichment of the expanded gene families in B. l.
tsinlingensis genome analyzed by CAFE.
Table S19. Relative evolution rate among these species by LINTRE
software.
Table S20. Relative evolution rate among these species by MEGA software.
Table S21. Positively selected genes in B. l. tsinlingensis .
Table S22. Positively selected genes in
salmonids.
Figure S1. 17-mer analysis of the B. l. tsinlingensis genome.
Figure S2. Genomic synteny between B. l. tsinlingensis andO. tshawytscha .
Figure S3. Genomic synteny between B. l. tsinlingensis andO. keta .
Figure S4. Genomic synteny between B. l. tsinlingensis andS. trutta .
Figure S5. Genomic synteny between B. l. tsinlingensis andO. nerka .
Figure S6. Genomic synteny between B. l. tsinlingensis andO. mykiss .
Figure S7. Genomic synteny between B. l. tsinlingensis andO. kisutch .
Figure S8. The genome GC content of these 11 species.
Figure S9. The CDS GC content of these 11 species.
Figure S10. The distribution of gene stat in these species.
Figure S11. Phylogenetic relationship among the 14 species inferred by
the 4dTV data of the single-copy genes.
Figure S12. Phylogenetic relationship among the 14 species inferred by
the nucleotide acid sequences of the single-copy genes.
Figure S13. Phylogenetic relationship among the 14 species inferred by
the amino acid sequences of the single-copy genes.