Table 2: Canadian MPB average nucleotide diversity, Tajima’sD and FST estimates.
We used Popoolation2 (Kofler et al., 2011) and the final female genome assembly to evaluate nucleotide diversity (π), differentiation (FST ) and Tajima’s D between northern and southern pool-seq datasets
PartitionDiversity (π)NorthDiversity (π)SouthTajima's DNorthTajima's DSouthFST(North vs South)
Ancestral-autosomal region of neo-X1.267%1.265%-0.965-1.0500.038
Ancestral-X region of neo-X0.431%0.569%-1.214-0.9130.096
Autosomes1.016%1.194%-0.790-0.8130.067
    Chromosome 20.741%0.859%-0.880-0.9500.063
    Chromosome 30.996%1.195%-0.793-0.8050.068
    Chromosome 41.301%1.587%-0.599-0.4960.092
    Chromosome 50.986%1.197%-0.824-0.8380.068
    Chromosome 60.926%1.117%-0.791-0.8950.064
    Chromosome 70.949%1.096%-0.738-0.7840.062
    Chromosome 80.838%1.021%-0.804-0.7890.068
    Chromosome 91.077%1.203%-0.846-0.9160.055
    Chromosome 101.191%1.431%-0.867-0.8790.059
    Chromosome 111.256%1.547%-0.840-0.8730.062
    Chromosome 121.723%2.079%-0.749-0.8680.058