Number of candidate SNPs Predicted variant Impact Associated gene Associated gene function Associated gene function Species Species Reference(s)
Genes involved H. iris HaHV-1 immune response Genes involved H. iris HaHV-1 immune response Genes involved H. iris HaHV-1 immune response Genes involved H. iris HaHV-1 immune response
17 MODERATE, LOW, MODIFIER SLC1A2 SLC1A2 Excitatory amino acid transporter 2, response to HaHV-1 exposure Haliotis iris Neave et al. 2019 Neave et al. 2019 Neave et al. 2019
35 MODERATE, LOW, MODIFIER CYP3A4 CYP3A4 Response to HaHV-1 exposure Haliotis iris Neave et al. 2019 Neave et al. 2019 Neave et al. 2019
6 MODERATE, MODIFIER ACE ACE Response to HaHV-1 exposure Haliotis iris Neave et al. 2019 Neave et al. 2019 Neave et al. 2019
2 MODIFIER POU6F2 POU6F2 Response to HaHV-1 exposure Haliotis iris Neave et al. 2019 Neave et al. 2019 Neave et al. 2019
3 MODIFIER NLGN4X NLGN4X Response to HaHV-1 exposure Haliotis iris Neave et al. 2019 Neave et al. 2019 Neave et al. 2019
2 MODIFIER CYP3A7 CYP3A7 Response to HaHV-1 exposure Haliotis iris Neave et al. 2019 Neave et al. 2019 Neave et al. 2019
1 MODIFIER Peritrophin 44 like (LOC105317660) Peritrophin 44 like (LOC105317660) Chitin-binding peritrophin-A domain, response to HaHV-1 exposure Haliotis iris Neave et al. 2019 Neave et al. 2019 Neave et al. 2019
1 MODIFIER Uncharacterized LOC105326593 (LOC105326593) Uncharacterized LOC105326593 (LOC105326593) Chitin-binding peritrophin-A domain, response to HaHV-1 exposure Haliotis iris Neave et al. 2019 Neave et al. 2019 Neave et al. 2019
17 MODIFIER CHIT1 CHIT1 Chitin-binding peritrophin-A domain, response to HaHV-1 exposure Haliotis iris Neave et al. 2019 Neave et al. 2019 Neave et al. 2019
15 MODIFIER CYP3A5 CYP3A5 Response to HaHV-1 exposure Haliotis iris Neave et al. 2019 Neave et al. 2019 Neave et al. 2019
1 MODIFIER CYP3A43 CYP3A43 Response to HaHV-1 exposure Haliotis iris Neave et al. 2019 Neave et al. 2019 Neave et al. 2019
14 MODIFIER Ganglioside GM2 activator like (LOC105346019) Ganglioside GM2 activator like (LOC105346019) Chitin-binding peritrophin-A domain, response to HaHV-1 exposure Haliotis iris Neave et al. 2019 Neave et al. 2019 Neave et al. 2019
1 MODIFIER Ganglioside GM2 activator like (LOC105348613) Ganglioside GM2 activator like (LOC105348613) Chitin-binding peritrophin-A domain, response to HaHV-1 exposure Haliotis iris Neave et al. 2019 Neave et al. 2019 Neave et al. 2019
Gene homologs associated with herpesvirus response pathways Gene homologs associated with herpesvirus response pathways Gene homologs associated with herpesvirus response pathways Gene homologs associated with herpesvirus response pathways Gene homologs associated with herpesvirus response pathways
2 MODIFIER CASP8 CASP8 Herpesvirus response pathway Haliotis discus hannai Nam et al. 2016 Nam et al. 2016 Nam et al. 2016
1 MODIFIER TAF10 TAF10 Herpesvirus response pathway Homo sapiens Wagner & DeLuca, 2013 Wagner & DeLuca, 2013 Wagner & DeLuca, 2013
1 MODIFIER ARNTL ARNTL Herpesvirus response pathway Homo sapiens Edgar et al. 2016 Edgar et al. 2016 Edgar et al. 2016
7 MODIFIER EEF1D EEF1D Herpesvirus response pathway Homo sapiens Boulben et al. 2003 Boulben et al. 2003 Boulben et al. 2003
2 MODIFIER SRSF7 SRSF7 Herpesvirus response pathway Homo sapiens Tang et al. 2019 Tang et al. 2019 Tang et al. 2019
6 MODIFIER Ube2r2 Ube2r2 Herpesvirus response pathway Homo sapiens Beard et al. 2015 Beard et al. 2015 Beard et al. 2015
2 MODIFIER CREBBP CREBBP Herpesvirus response pathway, C-type lectin containing or involved in c-type lectin pathway (invertebrate immune response) Haliotis discus hannai, Procambarus clarkii, Penaeus monodon Nam et al. 2016, Zhang et al. 2018, Qin et al. 2019, Wang & Wang, 2013 Nam et al. 2016, Zhang et al. 2018, Qin et al. 2019, Wang & Wang, 2013 Nam et al. 2016, Zhang et al. 2018, Qin et al. 2019, Wang & Wang, 2013
2 MODIFIER SRPK1 SRPK1 Herpesvirus response pathway Homo sapiens Souki & Sandri-Golden, 2009 Souki & Sandri-Golden, 2009 Souki & Sandri-Golden, 2009
2 MODIFIER TAF6 TAF6 Herpesvirus response pathway Homo sapiens Wagner & DeLuca, 2013 Wagner & DeLuca, 2013 Wagner & DeLuca, 2013
1 MODIFIER TAB1 TAB1 Herpesvirus response pathway Homo sapiens Jahanban‐Esfahlan et al. 2019 Jahanban‐Esfahlan et al. 2019 Jahanban‐Esfahlan et al. 2019
1 MODIFIER Csnk2b Csnk2b Herpesvirus response pathway Homo sapiens Carter 2011 Carter 2011 Carter 2011
4 MODIFIER Hnrnpk Hnrnpk Herpesvirus response pathway Homo sapiens Schmidt et al. 2010 Schmidt et al. 2010 Schmidt et al. 2010
1 MODIFIER PPP1CA PPP1CA Herpesvirus response pathway Homo sapiens Silva et al. 2015 Silva et al. 2015 Silva et al. 2015
Gene homologs associated with host-virus interactions Gene homologs associated with host-virus interactions Gene homologs associated with host-virus interactions Gene homologs associated with host-virus interactions Gene homologs associated with host-virus interactions
4 MODIFIER HIST1H2AA HIST1H2AA Abalone immune response Haliotis discus hannai Nam et al. 2016 Nam et al. 2016 Nam et al. 2016
1 LOW COTL1 COTL1 Tropomyosin, abalone immune response Haliotis discus hannai Nam et al. 2016 Nam et al. 2016 Nam et al. 2016
1 LOW, MODIFIER PDIA3 PDIA3 Protein disulfide isomerase activity, abalone immune response Haliotis discus hannai Nam et al. 2016 Nam et al. 2016 Nam et al. 2016
1 MODIFIER HSP90AB1 HSP90AB1 Abalone immune response Haliotis discus hannai Nam et al. 2016 Nam et al. 2016 Nam et al. 2016
4 MODIFIER Histone H2A (LOC105320412) Histone H2A (LOC105320412) Abalone immune response Haliotis discus hannai Nam et al. 2016 Nam et al. 2016 Nam et al. 2016
8 LOW, MODIFIER AVIL AVIL Gelsolin domain, abalone immune response Haliotis discus hannai Nam et al. 2016 Nam et al. 2016 Nam et al. 2016
1 MODIFIER Hsp70 member 12A (HSPA12A) Hsp70 member 12A (HSPA12A) Abalone immune response Haliotis laevigata, Haliotis ruscefens, Haliotis discus hannai Shiel et al. 2015, Brokordt et al. 2015, Nam et al. 2016 Shiel et al. 2015, Brokordt et al. 2015, Nam et al. 2016 Shiel et al. 2015, Brokordt et al. 2015, Nam et al. 2016
3 MODIFIER PSMA8 PSMA8 C-type lectin containing or involved in c-type lectin pathway (invertebrate immune response) Haliotis discus hannai, Procambarus clarkii, Penaeus monodon Nam et al. 2016, Zhang et al. 2018, Qin et al. 2019, Wang & Wang, 2013 Nam et al. 2016, Zhang et al. 2018, Qin et al. 2019, Wang & Wang, 2013 Nam et al. 2016, Zhang et al. 2018, Qin et al. 2019, Wang & Wang, 2013
1 MODIFIER IRAK4 IRAK4 Toll-like receptor activity, innate immunity C. gigas, H. diversicolor Tang et al. 2017, Ge et al. 2011 Tang et al. 2017, Ge et al. 2011 Tang et al. 2017, Ge et al. 2011
2 MODIFIER TIA1 TIA1 Viral translation inhibition Homo sapiens McCormick & Khaperskyy, 2017 McCormick & Khaperskyy, 2017 McCormick & Khaperskyy, 2017