References
Bates D, Mächler M, Bolker B, Walker S (2015). Fitting linear
mixed-effects models
using lme4. Journal of Statistical Software , 67(1), 1–48. doi:
10.18637/jss.v067.i01.
Bolyen, E., Rideout,
J. R., Dillon, M. R.,… Caporaso, J. G. (2018). QIIME 2:
Reproducible, interactive, scalable, and extensible microbiome data
science [Preprint]. PeerJ Preprints.
https://doi.org/10.7287/peerj.preprints.27295v2
Brofft B., J., Lamb,
M., Walker, M., Weed, C., & Stephenson C., K. (2018). Detection of
potential fungal pathogens Fusarium falciforme and F.
keratoplasticum in unhatched loggerhead turtle eggs using a molecular
approach. Endangered Species Research, 36, 111–119.
https://doi.org/10.3354/esr00895
Callahan, B. J.,
McMurdie, P. J., Rosen, M. J., … Holmes, S. P. (2016). DADA2:
High-resolution sample inference from Illumina amplicon data.Nature Methods, 13(7), 581–583.
https://doi.org/10.1038/nmeth.3869
Candan, E. D. (2018).
Molecular identification of fungal isolates and hatching success of
green turtle (Chelonia mydas) nests. Archives of
Microbiology, 200(6), 911–919.
https://doi.org/10.1007/s00203-018-1496-0
Cobo-Díaz, J. F.,
Baroncelli, R., Le Floch, G., & Picot, A. (2019). A novel metabarcoding
approach to investigate Fusarium species composition in soil and plant
samples. FEMS Microbiology Ecology, 95(7), fiz084.
https://doi.org/10.1093/femsec/fiz084
Craven, K., Awong-Taylor, J., Griffiths, L., Bass, C., & Muscarella, M.
(2007). Identification of bacterial isolates from unhatched loggerhead
(Caretta caretta ) sea turtle eggs in Georgia, USA. Marine
Turtle Newsletter , 115 , 9–11.
Fisher, M. C., Henk,
Daniel. A., Briggs, C. J., Brownstein, J. S., Madoff, L. C., McCraw, S.
L., & Gurr, S. J. (2012). Emerging fungal threats to animal, plant and
ecosystem health. Nature, 484(7393), 186–194.
https://doi.org/10.1038/nature10947
García-Martín, J. M., Sarmiento-Ramírez, J. M., & Diéguez-Uribeondo, J.
(2021). Beyond sea turtles: Fusarium keratoplasticum in eggshells
of Podocnemis unifilis , a threatened Amazonian freshwater turtle.Journal of Fungi , 7 (9), 742.
https://doi.org/10.3390/jof7090742
Kearse, M., Moir, R., Wilson, A., Stones-Havas, S., Cheung, M.,
Sturrock, S., Buxton, S., Cooper, A., Markowitz, S., Duran, C., Thierer,
T., Ashton, B., Meintjes, P., & Drummond, A. (2012). Geneious Basic: An
integrated and extendable desktop software platform for the organization
and analysis of sequence data. Bioinformatics , 28 (12),
1647–1649. https://doi.org/10.1093/bioinformatics/bts199
Menke, S., Gillingham,
M. A. F., Wilhelm, K., & Sommer, S. (2017). Home-made cost effective
preservation buffer is a better alternative to commercial preservation
methods for microbiome research. Frontiers in Microbiology,8. https://doi.org/10.3389/fmicb.2017.00102
Phillott, Andrea D.,
& Parmenter, C. J. (2001). The distribution of failed eggs and the
appearance of fungi in artificial nests of green (Chelonia mydas)
and loggerhead (Caretta caretta) sea turtles. Australian
Journal of Zoology, 49(6), 713. https://doi.org/10.1071/ZO00051
Rhodin, A. G. J.,
Iverson, J. B., Bour, R., Fritz, U., Georges, A., Shaffer, H. B., & van
Dijk, P. P. (2017). Turtles of the world: Annotated checklist and atlas
of taxonomy, synonymy, distribution, and conservation status (8th
Ed.). Chelonian
Research Foundation & Turtle Conservancy.
https://doi.org/10.3854/crm.7.checklist.atlas.v8.2017
Robeson, M. S.,
O’Rourke, D. R., Kaehler, B. D., Ziemski, M., Dillon, M. R., Foster, J.
T., & Bokulich, N. A. (2020). RESCRIPt: Reproducible sequence taxonomy
reference database management for the masses [Preprint].
Bioinformatics. https://doi.org/10.1101/2020.10.05.326504
Ronquist, F.,
Teslenko, M., van der Mark, P., Ayres, D. L., Darling, A., Höhna, S.,
… Huelsenbeck, J. P. (2012). MrBayes 3.2: Efficient bayesian
phylogenetic
inference and
model
choice
across a
large
model
space.Systematic Biology, 61(3), 539–542.
https://doi.org/10.1093/sysbio/sys029
RStudio Team. (2020).
RStudio: Integrated development
environment for R
(Version 3.6.3). Boston, MA: RStudio, Inc. Retrieved from
http://www.rstudio.com/
Santos Costa Neves,
M., Carneiro de Melo Moura, C., & Goncalves de Oliveira, L. (2015).
Mycobiota from the eggs, nests and stillbirths of Eretmochelys
imbricata Linneus 1766 (Testudines: Cheloniidae) in Pernambuco State,
Brazil. African Journal of Microbiology Research, 9(17),
1195–1199. https://doi.org/10.5897/AJMR2015.7389
Sarmiento-Ramírez, J.
M., Abella, E., Martín, M. P., Tellería, M. T., López-Jurado, L. F.,
Marco, A., & Diéguez-Uribeondo, J. (2010). Fusarium solani is
responsible for mass mortalities in nests of loggerhead sea turtle,Caretta caretta, in Boavista, Cape Verde: Fusarium solaniin sea turtle. FEMS Microbiology Letters, 312(2),
192–200. https://doi.org/10.1111/j.1574-6968.2010.02116.x
Sarmiento-Ramírez, J. M., Abella-Pérez, E., Phillott, A. D., Sim, J.,
van West, P., Martín, M. P., Marco, A., & Diéguez-Uribeondo, J. (2014).
Global distribution of two fungal pathogens threatening endangered sea
turtles. PLoS ONE, 9(1), e85853.
https://doi.org/10.1371/journal.pone.0085853
Solomon, S. E., and Tippett, R. (1987). The intra-clutch localisation of
fungal hyphae in the eggshells of the leatherback turtle
(Dermochelys coriacea ). Animal Technology 38, 73–79
Smyth, C. W.,
Sarmiento-Ramírez, J. M., Short, D. P. G., Diéguez-Uribeondo, J.,
O’Donnell, K., & Geiser, D. M. (2019). Unraveling the ecology and
epidemiology of an emerging fungal disease, sea turtle egg fusariosis
(STEF). PLOS Pathogens, 15(5), e1007682.
https://doi.org/10.1371/journal.ppat.1007682
Wyneken, J., Burke, T. J., Salmon, M., and Pederson, D. K. (1988). Egg
failure in natural and
relocated sea turtle nests. Journal of Herpetology 22, 88–96.