2.6.4 Association between DNA methylation and gene expression
changes
To find transcripts that were both differentially methylated and
differentially expressed between Cu-treated and control plants, i.e.
potential associations between changes in DNA methylation and gene
expression, we mapped the de novo reference to the de novotranscriptome using Blat 102 and intersected IDs of
the mapped sequences with the IDs of the lists of DMPs and DETs for each
population.