References
- Abarzúa, A. M., Villagrán, C., and Moreno, P. I. (2004). Deglacial and
postglacial climate history in east-center Isla Grande de Chiloé,
southern Chile (43 S). Quaternary Research , 62 (1),
49-59.
- Alberdi, M. and C. Donoso. (2004). Variación en Embothrium
coccineum J.R. et G.Forster (notro o ciruelillo), en C.Donoso, A.
Premoli, L. Gallo and F. Ipinza (eds.). Variación intraespecífica en
las especies arbóreas de los bosques templados de Chile y Argentina,Editorial Universitaria, Santiago de Chile, 345-355.
- Allnutt, T. R., Newton, A. C., Lara, A., Premoli, A., Armesto, J. J.,
Vergara, R., and Gardner, M. (1999). Genetic variation inFitzroya cupressoides (alerce), a threatened South American
conifer. Molecular Ecology , 8 (6), 975-987.
- Allnutt, T. R., Newton, A. C., Premoli, A., and Lara, A. (2003).
Genetic variation in the threatened South American coniferPilgerodendron uviferum (Cupressaceae), detected using RAPD
markers. Biological Conservation , 114 (2), 245-253.
- Ausin, I., Alonso-Blanco, C., and Martinez-Zapater, J. M. (2004).
Environmental regulation of flowering. International Journal of
Developmental Biology , 49 (5-6), 689-705.
- Baldocchi, D. D., and Xu, L. (2007). What limits evaporation from
Mediterranean oak woodlands–The supply of moisture in the soil,
physiological control by plants or the demand by the atmosphere?.Advances in Water Resources , 30 (10), 2113-2122.
- Bekessy, S. A., Allnutt, T. R., Premoli, A. C., Lara, A., Ennos, R.
A., Burgman, M. A., Newton, A. C. (2002). Genetic variation in the
vulnerable and endemic Monkey Puzzle tree, detected using RAPDs.Heredity , 88 (4), 243-249.
- Borcard, D., and Legendre, P. (2002). All-scale spatial analysis of
ecological data by means of principal coordinates of neighbour
matrices. Ecological modelling , 153 (1-2), 51-68.
- Bouckaert, R. R. (2010). DensiTree: making sense of sets of
phylogenetic trees. Bioinformatics , 26 (10), 1372-1373.
- Bouckaert, R., Heled, J., Kühnert, D., Vaughan, T., Wu, C. H., Xie,
D., Drummond, A. J. (2014). BEAST 2: a software platform for Bayesian
evolutionary analysis. PLoS Comput Biol , 10 (4),
e1003537.
- Bray, J. R., and Curtis, J. T. (1957). An ordination of the upland
forest communities of southern Wisconsin. Ecological
monographs , 27 (4), 326-349
- Bruno, M. C., Mapelli, F. J., Casciotta, J. R., Almirón, A. E., and
Lizarralde, M. S. (2016). Phylogeography of Cnesterodon
decemmaculatus (Cyprinodontiformes: poeciilidae) in Southern Pampas,
Argentina: ancient versus recent patterns in freshwater fishes.Environmental biology of fishes , 99 (2-3), 293-307.
- Bryant, D., Bouckaert, R., Felsenstein, J., Rosenberg, N. A., and
RoyChoudhury, A. (2012). Inferring species trees directly from
biallelic genetic markers: bypassing gene trees in a full coalescent
analysis. Molecular biology and evolution , 29 (8),
1917-1932.
- Carlson, J. E., Adams, C. A., and Holsinger, K. E. (2016).
Intraspecific variation in stomatal traits, leaf traits and physiology
reflects adaptation along aridity gradients in a South African shrub.Annals of botany , 117 (1), 195-207.
- Carlson, J. E., Holsinger, K. E., Prunier, R. (2011). Plant responses
to climate in the Cape Floristic Region of South Africa: Evidence for
adaptive differentiation in the Proteaceae. Evolution 65 ,
108-124.
- Catchen, J., Hohenlohe, P. A., Bassham, S., Amores, A., Cresko, W. A.
(2013). Stacks: an analysis tool set for population genomics.Molecular ecology , 22 (11), 3124-3140.
- Chalcoff, V. (2008). Variación geográfica en los rasgos florales deEmbothrium coccineum (Proteaceae) y su relación con los
ensambles de polinizadores a ambos lados de los Andes australes.
Tesis doctoral. Universidad Nacional del Comahue, Bariloche.
- Chalcoff, V. R., Ezcurra, C., and Aizen, M. A. (2008). Uncoupled
geographical variation between leaves and flowers in a South-Andean
Proteaceae. Annals of botany , 102 (1), 79-91.
- Collins, B.G. and Rebelo, T. (2006). Pollination biology of the
Proteaceae in Australia and southern Africa. Australian Journal
of Ecology , 12 (4), 387-421.
- Comps, B., Gömöry, D., Letouzey, J., Thiébaut, B., Petit, R. J.
(2001). Diverging trends between heterozygosity and allelic richness
during postglacial colonization in the European beech.Genetics , 157 (1), 389-397.
- Dimitri, M. J. (1972). La región de los bosques andino-patagónicos:
sinopsis general. Colección científica del Instituto Nacional de
Tecnología Agropecuaria (INTA), Buenos Aires, Argentina. 381 pp.
- Ellis, N., Smith, S. J., and Pitcher, C. R. (2012). Gradient forests:
calculating importance gradients on physical predictors. Ecology,
93(1), 156-168.
- Elshire, R. J., Glaubitz, J. C., Sun, Q., Poland, J. A., Kawamoto, K.,
Buckler, E. S., Mitchell, S. E. (2011). A robust, simple
genotyping-by-sequencing (GBS) approach for high diversity species.PloS one , 6(5), e19379.
- Escobar, B., C. Donoso, C., Souto A., Zúñiga, A. 2006.Embothrium coccineum J.R. et. G. Forster. In: Donoso, C. (ed.).Autoecología de las especies arbóreas de los bosques templados
de Chile y Argentina . Marisa Cuneo Ediciones. pp. 345 - 356.
- Falush, D., Stephens, M., Pritchard, J. K. (2003). Inference of
population structure using multilocus genotype data: linked loci and
correlated allele frequencies. Genetics , 164(4), 1567-1587.
- Fesq-Martin, M., Friedmann, A., Peters, M., Behrmann, J., Kilian, R.
(2004). Late-glacial and Holocene vegetation history of the Magellanic
rain forest in southwestern Patagonia, Chile. Vegetation History
and Archaeobotany , 13(4), 249-255.
- Fitzpatrick, M., Keller, S. (2014). Ecological genomics meets
community-level modelling of biodiversity: mapping the genomic
landscape of current and future environmental adaptation.Ecology Letters , 18: 1-16.
- Foll, M., Beaumont, M. A., and Gaggiotti, O. E. (2008). An approximate
Bayesian computation approach to overcome biases that arise when using
AFLP markers to study population structure. Genetics , 179(2),
927-39.
- Fontanella, F. M., Feldman, C. R., Siddall, M. E., Burbrink, F. T.
(2008). Phylogeography of Diadophis punctatus : extensive
lineage diversity and repeated patterns of historical demography in a
trans-continental snake. Molecular Phylogenetics and Evolution ,
46(3), 1049-1070.
- Goudet, J. (2005). Hierfstat, a package for R to compute and test
hierarchical F‐statistics. Molecular Ecology Notes , 5(1),
184-186.
- Grossiord, C., Sevanto, S., Dawson, T. E., Adams, H. D., Collins, A.
D., Hewitt, G. M. (2004). Genetic consequences of climatic
oscillations in the Quaternary. Philosophical Transactions of the
Royal Society of London. Series B: Biological Sciences ,
359(1442), 183-195.
- Hallik, L., Niinemets, Ü., and Wright, I. J. (2009). Are species shade
and drought tolerance reflected in leaf‐level structural and
functional differentiation in Northern Hemisphere temperate woody
flora?. New Phytologist , 184(1), 257-274.
- Hasbún, R., González, J., Iturra, C., Fuentes, G., Alarcón, D., Ruiz,
E. (2016). Using genome-wide SNP discovery and genotyping to reveal
the main source of population differentiation in Nothofagus
dombeyi (Mirb.) Oerst. in Chile. International journal of
genomics , 2016.
- Heusser, C. J., and Heusser, L. E. (2006). Submillennial palynology
and palaeoecology of the last glaciation at Taiquemo (∼ 50,000 cal yr,
MIS 2–4) in southern Chile. Quaternary Science Reviews ,
25(5-6), 446-454.
- Heusser, C. J., Heusser, L. E., Lowell, T. V. (1999). Paleoecology of
the southern chilean lake district‐isla grande de chiloé during
middle–late llanquihue glaciation and deglaciation. Geografiska
Annaler: Series A, Physical Geography , 81(2), 231-284.
- Hewitt, G. M., and Ibrahim, K. M. (2001). Inferring glacial refugia
and historical migrations with molecular phylogenies. In Silvertown,
J. and Antonovics, J. (Eds.), Integrating ecology and evolution
in a spatial context , 97– 123.
- Hoffmann, J. (1997). Flora silvestre de Chile. Zona araucana. Arboles,
arbustos y enredaderas leñosas. Ediciones Fundación Claudio
Gay .
- Huck, S., Büdel, B., Kadereit, J. W., Printzen, C. (2009). Range‐wide
phylogeography of the European temperate‐montane herbaceous plantMeum athamanticum Jacq.: evidence for periglacial persistence.Journal of Biogeography , 36(8), 1588-1599.
- Johnson, S. D., Linder, H. P., Allsopp, N., Colville, J. F., Verboom,
G. A. (2014). Speciation and extinction in the Greater Cape Floristic
Region. Fynbos: Ecology, Evolution, and Conservation of a
Megadiverse Region , 119.
- Jombart, T. (2008). adegenet: a R package for the multivariate
analysis of genetic markers. Bioinformatics , 24(11), 1403-1405.
- Loguercio, G. A., Donoso, P. J., Müller-Using, S., Dezzotti, A.,
Urretavizcaya, M. F., Navarro, C. O., Caselli, M. (2018). Silviculture
of temperate mixed forests from South America. In Dynamics,
Silviculture and Management of Mixed Forests, 271-317.
- Luu, K., Bazin, E., Blum, M. G. (2017). pcadapt: an R package to
perform genome scans for selection based on principal component
analysis. Molecular ecology resources , 17 (1), 67-77.
- Markgraf, V. (1983). Late and postglacial vegetational and
paleoclimatic changes in subantarctic, temperate, and arid
environments in Argentina. Palynology, 7, 43-70 .
- Markgraf, V. (1995). Neogene paleoenvironmental and paleoclimatic
changes in southern temperate ecosystems — A southern perspective.Trends in Ecology and Evolution, 10, 143-147.
- Martínez, O. and Kutschker, A. (2011). The ‘Rodados Patagónicos’
(Patagonian shingle formation) of eastern Patagonia: environmental
conditions of gravel sedimentation. Biological Journal of the
Linnean Society , 103 (2), 336-345.
- Martins PS (1987) Estrutura populacional, fluxo gênico e conservação
“in situ ”. Ipef, 71-78.
- Mathiasen, P. (2004). Efectos de la fragmentación del bosque templado
sobre la demografía y estructura genética de Embothrium
coccineum Forst. (Proteaceae) en el sur de Chile (Doctoral
dissertation, Tesis de Licenciatura, Universidad Nacional del Comahue,
Bariloche, Argentina) .
- Mathiasen, P. and Premoli, A. (2010). Out in the cold: Genetic
vari-ation of Nothofagus pumilio (Nothofagaceae) provides
evidence for latitudinally distinct evolutionary histories in austral
South America. Molecular Ecology, 19, 371- 385.
- Mathiasen, P., Rovere, A. E., Premoli, A. C. (2007). Genetic structure
and early effects of inbreeding in fragmented temperate forests of a
self‐incompatible tree, Embothrium coccineum .Conservation biology , 21 (1), 232-240.
- Moreno, P. I. (1997). Vegetation and climate near Lago Llanquihue in
the Chilean Lake District between 20200 and 9500 14C yr BP.Journal of Quaternary Science: Published for the Quaternary
Research Association , 12 (6), 485-500.
- Moreno, P. I., and León, A. L. (2003). Abrupt vegetation changes
during the last glacial to Holocene transition in mid‐latitude South
America. Journal of Quaternary Science , 18 (8), 787-800.
- Moreno, P. I., Lowell, T. V., Jacobson Jr, G. L., Denton, G. H.
(1999). Abrupt vegetation and climate changes during the last glacial
maximum and last termination in the chilean lake district: a case
study from canal de la puntilla (41 S). Geografiska Annaler:
Series A, Physical Geography , 81 (2), 285-311.
- Oksanen, J., Kindt, R., Legendre, P., O’Hara, B., Stevens, M. H. H.,
Oksanen, M. J., Suggests, M. A. S. S. (2007). The vegan package.Community ecology package , 10 (631-637), 719.
- Orsini, L., Vanoverbeke, J., Swillen, I., Mergeay, J., De Meester, L.
(2013). Drivers of population genetic differentiation in the wild:
isolation by dispersal limitation, isolation by adaptation and
isolation by colonization. Molecular ecology , 22 (24),
5983-5999.
- Paris, J. R., Stevens, J. R., Catchen, J. M. (2017). Lost in parameter
space: a road map for stacks. Methods in Ecology and Evolution ,8 (10), 1360-1373.
- Pinceel, J., Jordaens, K., Van Houtte, N., Bernon, G., Backeljau, T.
(2005). Population genetics and identity of an introduced terrestrial
slug: Arion subfuscus sl in the north-east USA (Gastropoda,
Pulmonata, Arionidae). Genetica , 125 (2-3), 155-171.
- Pembleton, L. W., Cogan, N. O., Forster, J. W. (2013). StAMPP: An R
package for calculation of genetic differentiation and structure of
mixed‐ploidy level populations. Molecular ecology resources ,13 (5), 946-952.
- Perez, M. (2017). Comparative phylogeography of woody plant species
from mediterranean and temperate forest of southern south america:
testing the influence of plant functional strategies on the response
of species to past climatic changes. Fondecyt de iniciación.http://repositorio.conicyt.cl/handle/10533/236747
- Ponce, J. F., Rabassa, J., Coronato, A., Borromei, A. M. (2011).
Paleogeographic evolution of the Atlantic coast of Pampa and Patagonia
since the Last Glacial Maximum to the Middle Holocene.Biological Journal of the Linnean Society, 103, 363-379.
- Premoli, A. C., Kitzberger, T., Veblen, T. (2000). Isozyme variation
and recent biogeographical history of the long‐lived coniferFitzroya cupressoides . Journal of Biogeography ,27 (2), 251-260.
- Premoli, A. C., Souto, C. P., Allnutt, T. R., Newton, A. C. (2001).
Effects of population disjunction on isozyme variation in the
widespread Pilgerodendron uviferu m. Heredity ,87 (3), 337-343.
- Premoli, A. C., Souto, C. P., Rovere, A. E., Allnut, T. R., Newton, A.
C. (2002). Patterns of isozyme variation as indicators of
biogeographic history in Pilgerodendron uviferum (D. Don)
Florin. Diversity and Distributions , 8 (2), 57-66.
- Premoli, A. C., Vergara, R., Souto, C. P., Lara, A., Newton, A. C.
(2003). Lowland valleys shelter the ancient conifer Fitzroya
cupressoides in the Center Depression of southern Chile.Journal of the Royal Society of New Zealand , 33 (3),
623-631.
- Premoli, A.C. (2004). Variación en Nothofagus pumilio. Variación
intraespecífica en las especies de los bosques templados de Chile y
Argentina, Editorial Universitaria, Santiago, Chile, 145-172.
- Premoli, A. C., Mathiasen, P., Kitzberger, T. (2010). Southern-most
Nothofagus trees enduring ice ages: genetic evidence and ecological
niche retrodiction reveal high latitude (54° S) glacial refugia.Palaeogeography, Palaeoclimatology, Palaeoecology ,298 (3-4), 247-256.
- Prunier, R., Akman, M., Kremer, C. T., Aitken, N., Chuah, A.,
Borevitz, J., Holsinger, K. E. (2017). Isolation by distance and
isolation by environment contribute to population differentiation inProtea repens (Proteaceae L.), a widespread South African
species. American journal of botany , 104 (5), 674-684.
- Prunier, R., Holsinger, K. E., Carlson, J. E. (2012). The effect of
historical legacy on adaptation: do closely related species respond to
the environment in the same way?. Journal of evolutionary
biology , 25 (8), 1636-1649.
- Quiroga, M.P., and Premoli, A.C. (2010). Genetic structure of
Podocarpus nubigena (Podocarpaceae) provides evidence of Quaternary
and ancient historical events. Palaeogeography,
Palaeoclimatology, Palaeoecology , 285 (3-4), 186-193.
- Rabassa, J., Coronato, A. M., Salemme, M. (2005). Chronology of the
Late Cenozoic Patagonian glaciations and their correlation with
biostratigraphic units of the Pampean region (Argentina).Journal of South American Earth Sciences , 20 (1-2),
81-103.
- Rabassa, J., Coronato, A., Martinez, O. (2011). Late Cenozoic
glaciations in Patagonia and Tierra del Fuego: an updated review.Biological Journal of the Linnean Society , 103 (2),
316-335.
- Ramos, V. A., and Ghiglione, M. C. (2008). Tectonic evolution of the
Patagonian Andes. Developments in quaternary sciences ,11 , 57-71.
- Rannala, B., and Yang, Z. (2003). Bayes estimation of species
divergence times and ancestral population sizes using DNA sequences
from multiple loci. Genetics , 164 (4), 1645-1656.
- Rovere, A. E., and Premoli, A. C. (2005). Dispersión asimétrica de
semillas de Embothrium coccineum (Proteaceae) en el bosque
templado de Chiloé, Chile. Ecología austral , 15 (1), 1-7.
- Rovere, A. E., and Chalcoff, V. R. (2010). Embothrium coccineumJR Forst. et G. Forst. Kurtziana , 35 (2), 23-33.
- Sauquet, H., Weston, P. H., Anderson, C. L., Barker, N. P., Cantrill,
D. J., Mast, A. R., Savolainen, V. (2009). Contrasted patterns of
hyperdiversification in Mediterranean hotspots. Proceedings of
the National Academy of Sciences , 106 (1), 221-225.
- Segovia, R. A., Pérez, M. F., Hinojosa, L. F. (2012). Genetic evidence
for glacial refugia of the temperate tree Eucryphia cordifolia(Cunoniaceae) in southern South America. American Journal of
Botany , 99 (1), 121-129.
- Sersic, A. N., Cosacov, A., Cocucci, A. A., Johnson, L. A., Pozner,
R., Avila, L. J., Morando, M. (2011). Emerging phylogeographical
patterns of plants and terrestrial vertebrates from Patagonia.Biological Journal of the Linnean Society , 103 (2),
475-494.
- Slatkin, M. (1993). Isolation by distance in equilibrium and
non‐equilibrium populations. Evolution , 47 (1), 264-279.
- Smith-Ramírez, C., Rovere, A. E., Núñez-Ávila, M. C., Armesto, J. J.
(2007). Habitat fragmentation and reproductive ecology ofEmbothrium coccineum, Eucryphia cordifolia and Aextoxicon
punctatum in southern temperate rainforests. Biodiversity loss
and conservation , 102-119.
- Souto, C. P., and Smouse, P. E. (2014). Correlated morphological and
genetic patterns in Embothrium coccineum (Proteaceae) across
climate and geography: can Embothrium survive patagonian climate
change?. Australian Journal of Botany , 61 (7), 516-527.
- Souto, C. P., and Premoli, A. C. (2007). Genetic variation in the
widespread Embothrium coccineum (Proteaceae) endemic to
Patagonia: effects of phylogeny and historical events.Australian Journal of Botany , 55 (8), 809-817.
- Stange, M., Sánchez-Villagra, M., Salzburger, W., Matschiner, M.
(2018). Bayesian Divergence-Time Estimation with Genome-Wide
Single-Nucleotide Polymorphism Data of Sea Catfishes (Ariidae)
Supports Miocene Closure of the Panamanian Isthmus. Systematic
Biology, 67 , 681-699.
- Steubing, L., Alberdi, M., Wenzel, H. (1983). Seasonal changes of cold
resistance of Proteaceae of the South Chilean laurel forest.Vegetatio , 52 (1), 35-44.
- Storey, J. D., Taylor, J. E., Siegmund, D. (2004). Strong control,
conservative point estimation and simultaneous conservative
consistency of false discovery rates: a unified approach.Journal of the Royal Statistical Society: Series B (Statistical
Methodology) , 66 (1), 187-205.
- Torres-Díaz, C., Ruiz, E., González, F., Fuentes, G., Cavieres, L. A.
(2007). Genetic diversity in Nothofagus alessandrii (Fagaceae),
an endangered endemic tree species of the Coastal Maulino Forest of
Center Chile. Annals of Botany , 100 (1), 75-82.
- Turchetto‐Zolet, A. C., Pinheiro, F., Salgueiro, F., Palma‐Silva, C.
(2013). Phylogeographical patterns shed light on evolutionary process
in South America. Molecular Ecology , 22 (5), 1193-1213.
- Varas-Myrik, A., Sepúlveda-Espinoza, F., Fajardo, A., Alarcón, D.,
Toro-Núñez, Ó., Castro-Nallar, E., & Hasbún, R. (2022). Predicting
climate change-related genetic offset for the endangered southern
South American conifer Araucaria araucana . Forest Ecology and
Management, 504, 119856.
- Vidal, M. A., Ortiz, J. C., Ramirez, C. C., Lamborot, M. (2005).
Intraspecific variation in morphology and sexual dimorphism inLiolaemus tenuis (Tropiduridae). Amphib-Repti, 26,
343-351.
- Vidal-Russell, R., Souto, C. P., Premoli, A. C. (2011). Multiple
Pleistocene refugia in the widespread Patagonian tree Embothrium
coccineum (Proteaceae). Australian Journal of Botany ,59 (4), 299-314.
- Villagrán, C. (1988). Expansion of Magellanic Moorland during the late
Pleistocene: Palynological evidence from northern Isla de Chiloé,
Chile. Quaternary Research , 30 (3), 304-314.
- Villagrán, C. (1991). Historia de los bosques templados del sur de
Chile durante el Tardiglacial y Postglacial. Revista Chilena de
Historia Natural , 64 (3), 447-460.
- Wang, I. J., and Bradburd, G. S. (2014). Isolation by environment.Molecular ecology , 23 (23), 5649-5662.
- Wang, I. J., and Summers, K. (2010). Genetic structure is correlated
with phenotypic divergence rather than geographic isolation in the
highly polymorphic strawberry poison‐dart frog. Molecular
Ecology , 19 (3), 447-458.
- Wright, S. (1943). Isolation by distance. Genetics, 28, 114–138.
- Zegers, C. D. (1994). Bosques templados de Chile y Argentina.Editorial Universitaria.
- Zeppel, M. J., Wilks, J. V., and Lewis, J. D. (2014). Impacts of
extreme precipitation and seasonal changes in precipitation on plants.Biogeosciences, 11, 3083-3093.