Data Accessibility
Raw RNA-sequencing and ISO-sequencing data, and the transcriptome
assembly (fasta file) can be found at NCBI BioProject PRJNA798187 (this
is embargoed until peer-reviewed publication) (Thomas et al., 2022). Raw gene count data, raw water sampling
data, all scripts used for bioinformatic analyses, the annotated
transcriptome assembly (OmicsBox and csv files), R code used for the
statistical analyses (differential expression and gene set analyses),
and data files to accompany the statistical analyses are available from
DOI 10.25903/ha66-mm11 (this DOI is embargoed until peer-reviewed publication) (Thomas et al., 2023b). All R code for the statistical analyses
(correlating gene expression profiles with CO2 treatment
and OA-affected behaviours), as well as accompanying data files for the
statistical analyses, can be found at DOI 10.25903/7dcz-th66 (this DOI
is embargoes until peer-reviewed publication) (Thomas et al., 2023a).