Within-genus clustering |
|
|
|
|
Alphapapillomavirus, number of types detected in sample |
|
Expected
with total type independence |
|
|
0
|
1718
|
1693
|
1.01
|
1.01-1.02
|
1
|
257
|
299
|
0.86
|
0.81-0.91
|
2+
|
44
|
26
|
1.74
|
1.26-2.44
|
Betapapillomavirus, number of types detected in sample |
|
Expected with
total type independence |
|
|
0
|
1719
|
1675
|
1.03
|
1.02-1.03
|
1
|
225
|
299
|
0.75
|
0.71-0.80
|
2+
|
56
|
26
|
2.24
|
1.65-3.29
|
Cross-genus clustering |
|
|
|
|
Number of genera detected in sample |
|
Expected with total type
independence |
|
|
0 (Alpha-, Beta-)
|
1456
|
1405
|
1.04
|
1.02-1.05
|
1 (Either)
|
511
|
543
|
0.94
|
0.90-0.99
|
1 (Alpha+, Beta-)
|
263
|
270
|
0.97
|
0.93-1.03
|
1 (Alpha-, Beta+)
|
248
|
273
|
0.91
|
0.86-0.96
|
2 (Alpha+, Beta+)
|
33
|
52
|
0.64
|
0.51-0.83
|
Number of genera detected in sample |
|
Expected with within-genus
clustering |
|
|
0 (Alpha-, Beta-)
|
1456
|
1463
|
1.00
|
0.99-1.00
|
1 (Either)
|
511
|
495
|
1.03
|
0.99-1.08
|
1 (Alpha+, Beta-)
|
263
|
256
|
1.03
|
0.99-1.07
|
1 (Alpha-, Beta+)
|
248
|
239
|
1.04
|
0.99-1.09
|
2 (Alpha+, Beta+)
|
33
|
42
|
0.80
|
0.62-1.06
|