Genome assembly and annotation
Raw sequencing reads were trimmed with Trimmomatic v.0.12 (Bolger,
Lohse, & Usadel, 2014) and assembled with SPAdes v.3.12.0 (Bankevich et
al., 2012). Assembled genomes are accessioned in GenBank (Supplementary
Table 1). FunAnnotate (Palmer & Stajich, 2019) was used to annotate all
examined genomes using protein models from the annotated P.
cyanescens reference assembly (Reynolds et al., 2018), BUSCO models for
Basidiomycota, and Augustus models from Laccaria bicolor (Martin
et al., 2008).