References
Arruda, B., P. Piñeyro, R. Derscheid, B. Hause, E. Byers, K. Dion, D.
Long, C. Sievers, J. Tangen, T. Williams and K. Schwartz, 2019:
PCV3-associated disease in the United States swine herd. Emerg
Microbes Infect, 8, 684-698.
https://doi.org/10.1080/22221751.2019.1613176
Assao, V. S., M. R. Santos, C. E. R. Pereira, F. Vannucci and A.
Silva-Júnior, 2021a: Porcine circovirus 3 in North and South America:
Epidemiology and genetic diversity. Transboundary and emerging
diseases . https://doi.org/10.1111/tbed.14238
Assao, V. S., M. R. Santos, N. C. L. Rosado, G. C. Bressan, J. L. R.
Fietto, Y. F. Chang, P. M. P. Vidigal and A. Silva-Júnior, 2021b:
Genetic diversity of porcine circovirus 3 strains and the first
detection of two different PCV3 strains coinfecting the same host in
Minas Gerais, Brazil. Arch Virol, 166, 1463-1468.
https://doi.org/10.1007/s00705-021-05032-y
Darriba, D., G. L. Taboada, R. Doallo and D. Posada, 2012: jModelTest 2:
more models, new heuristics and parallel computing. Nature
Methods, 9, 772-772. https://doi.org/10.1038/nmeth.2109
Franzo, G., E. Delwart, R. Fux, B. Hause, S. Su, J. Zhou and J. Segalés,
2020: Genotyping Porcine Circovirus 3 (PCV-3) Nowadays: Does It Make
Sense? Viruses, 12. https://doi.org/10.3390/v12030265
Fu, X., B. Fang, J. Ma, Y. Liu, D. Bu, P. Zhou, H. Wang, K. Jia and G.
Zhang, 2018: Insights into the epidemic characteristics and evolutionary
history of the novel porcine circovirus type 3 in southern China.Transboundary and emerging diseases, 65, e296-e303.
https://doi.org/10.1111/tbed.12752
Gu, W., Q. Shi, L. Wang, J. Zhang, G. Yuan, S. Chen, Y. Zuo and J. Fan,
2020: Detection and phylogenetic analysis of porcine circovirus 3 in
part of northern China from 2016 to 2018. Arch Virol, 165,
2003-2011. https://doi.org/10.1007/s00705-020-04709-0
Jiang, H., D. Wang, J. Wang, S. Zhu, R. She, X. Ren, J. Tian, R. Quan,
L. Hou, Z. Li, J. Chu, Y. Guo, Y. Xi, H. Song, F. Yuan, L. Wei and J.
Liu, 2019: Induction of Porcine Dermatitis and Nephropathy Syndrome in
Piglets by Infection with Porcine Circovirus Type 3. Journal of
Virology, 93. https://doi.org/10.1128/jvi.02045-18
Katoh, K. and D. M. Standley, 2013: MAFFT Multiple Sequence Alignment
Software Version 7: Improvements in Performance and Usability.Molecular Biology and Evolution, 30, 772-780.
https://doi.org/10.1093/molbev/mst010
Klaumann, F., F. Correa-Fiz, G. Franzo, M. Sibila, J. I. Núñez and J.
Segalés, 2018: Current Knowledge on Porcine circovirus 3 (PCV-3): A
Novel Virus With a Yet Unknown Impact on the Swine Industry.Frontiers in Veterinary Science, 5.
https://doi.org/10.3389/fvets.2018.00315
Kozlov, A. M., D. Darriba, T. Flouri, B. Morel and A. Stamatakis, 2019:
RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood
phylogenetic inference. Bioinformatics, 35, 4453-4455.
https://doi.org/10.1093/bioinformatics/btz305
Nawagitgul, P., I. Morozov, S. R. Bolin, P. A. Harms, S. D. Sorden and
P. S. Paul, 2000: Open reading frame 2 of porcine circovirus type 2
encodes a major capsid protein. J Gen Virol, 81, 2281-2287.
https://doi.org/10.1099/0022-1317-81-9-2281
Palinski, R., P. Piñeyro, P. Shang, F. Yuan, R. Guo, Y. Fang, E. Byers
and B. M. Hause, 2017: A Novel Porcine Circovirus Distantly Related to
Known Circoviruses Is Associated with Porcine Dermatitis and Nephropathy
Syndrome and Reproductive Failure. Journal of Virology, 91.
https://doi.org/10.1128/jvi.01879-16
Phan, T. G., F. Giannitti, S. Rossow, D. Marthaler, T. P. Knutson, L.
Li, X. Deng, T. Resende, F. Vannucci and E. Delwart, 2016: Detection of
a novel circovirus PCV3 in pigs with cardiac and multi-systemic
inflammation. Virology journal, 13, 184.
https://doi.org/10.1186/s12985-016-0642-z
Plut, J., U. Jamnikar-Ciglenecki, I. Golinar-Oven, T. Knific and M.
Stukelj, 2020: A molecular survey and phylogenetic analysis of porcine
circovirus type 3 using oral fluid, faeces and serum. BMC Vet
Res, 16, 281. https://doi.org/10.1186/s12917-020-02489-y
Qi, S., M. Su, D. Guo, C. Li, S. Wei, L. Feng and D. Sun, 2019:
Molecular detection and phylogenetic analysis of porcine circovirus type
3 in 21 Provinces of China during 2015-2017. Transboundary and
emerging diseases, 66, 1004-1015.
https://doi.org/10.1111/tbed.13125
Rausch, T., M. H.-Y. Fritz, A. Untergasser and V. Benes, 2020: Tracy:
basecalling, alignment, assembly and deconvolution of sanger
chromatogram trace files. BMC Genomics, 21, 230.
https://doi.org/10.1186/s12864-020-6635-8
Sun, J., L. Wei, Z. Lu, S. Mi, F. Bao, H. Guo, C. Tu, Y. Zhu and W.
Gong, 2018: Retrospective study of porcine circovirus 3 infection in
China. Transboundary and emerging diseases, 65, 607-613.
https://doi.org/10.1111/tbed.12853
Waterhouse, A. M., J. B. Procter, D. M. Martin, M. Clamp and G. J.
Barton, 2009: Jalview Version 2–a multiple sequence alignment editor
and analysis workbench. Bioinformatics, 25, 1189-1191.
https://doi.org/10.1093/bioinformatics/btp033
Yu, G., 2020: Using ggtree to Visualize Data on Tree-Like Structures.Curr Protoc Bioinformatics, 69, e96.
https://doi.org/10.1002/cpbi.96