The Edit Menu

Undo

Recovers the state of the frame before the last operation that you did.

Undo

Re-does the last undo.

New (applet only)

Cleans the document (in the standalone up, there is a New item in the File menu).

Cut Selected

Removes the selected part from the model.

Select all

Selects and marks all atoms in the molecule, so that it can be rotated, moved, deleted, etc. This is a useful way to recover parts of the molecule that are outside the display area - select all, go into move mode and move the molecule using a visible part of it.

Hydrogens

Add Implicit Hydrogens

JCP can run in two different modes with respect to implicit hydrogens. You can switch between them here. The two modes are:

Note that: The following menu options allow manipulations of the implicit Hs.

Make Hydrogens Explicit

This will transform implicit hydrogens to separate atoms connected by a single bond. This will only have an effect if you are in implicit mode (see "Add Implicit Hydrogens")

Make Hydrogens Implicit

This will delete bonds to hydrogens and add hydrogens directly to their parent atoms as implicit hydrogens.

Update Implicit Hydrogen Count

This will set the implicit hydrogens on all atoms to satisfy valency. This can be called in both modes. If tracking of implicit Hs is off, this will only have a one-off effect.

Adjust Bond Orders

Sets the order of all bonds so that every atom is saturated.

Reset Bond Orders

Sets the order of all bonds to single.

Clean Up

This changes coordinates of atoms and length of bonds to standard representation.

Model Properties

Changes properties for this frame. Current properties are: author (who generated this model), generation date and software. Additionally, a CAS number and checksum can be given.